HHsearch alignment for GI: 254780380 and conserved domain: PRK12629
>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00 E-value=0 Score=286.51 Aligned_cols=131 Identities=27% Similarity=0.449 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCCCCEECCCCCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322----10475421000265431000
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH----GSGGVRVKKIGVDQSTFVEE 76 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~----~~~gv~~~~i~~~~~~~~~~ 76 (134)
T Consensus 1 Ms-~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~-~~~~yr~~~~vf~~~~~~~~~~~~~V~v~~i~~d~~~~~~~ 78 (135)
T PRK12629 1 MS-NLPIFDVAGSALHAQSVRLSTIASNLANADSVAGS-AEATYKPIEPIFQAQQSRQDPSLTSVNVKEITTTNAPPIRR 78 (135)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHC
T ss_conf 96-36577699998999999999999987746888989-99877640112564432457887866777754379850113
Q ss_pred CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 77 FDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 77 y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 79 YdP~hP~AD~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~igr 135 (135)
T PRK12629 79 YEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR 135 (135)
T ss_pred CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 499999988898884689888999999999999999999999999999999998559