HHsearch alignment for GI: 254780380 and conserved domain: PRK12629

>PRK12629 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00  E-value=0  Score=286.51  Aligned_cols=131  Identities=27%  Similarity=0.449  Sum_probs=122.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCCCCEECCCCCCCCCC
Q ss_conf             90478888521568999999989888753125555667543320110001234322----10475421000265431000
Q gi|254780380|r    1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH----GSGGVRVKKIGVDQSTFVEE   76 (134)
Q Consensus         1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~----~~~gv~~~~i~~~~~~~~~~   76 (134)
T Consensus         1 Ms-~~~~~~Is~Sgl~Aqr~Rm~~ia~NiANa~t~~~~-~~~~yr~~~~vf~~~~~~~~~~~~~V~v~~i~~d~~~~~~~   78 (135)
T PRK12629          1 MS-NLPIFDVAGSALHAQSVRLSTIASNLANADSVAGS-AEATYKPIEPIFQAQQSRQDPSLTSVNVKEITTTNAPPIRR   78 (135)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHC
T ss_conf             96-36577699998999999999999987746888989-99877640112564432457887866777754379850113


Q ss_pred             CCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r   77 FDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        77 y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
T Consensus        79 YdP~hP~AD~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~~~~~aK~m~~~aL~igr  135 (135)
T PRK12629         79 YEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKELALATLTMGR  135 (135)
T ss_pred             CCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             499999988898884689888999999999999999999999999999999998559