HHsearch alignment for GI: 254780380 and conserved domain: PRK12631
>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00 E-value=0 Score=290.51 Aligned_cols=131 Identities=36% Similarity=0.551 Sum_probs=122.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCCCCEECCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322-------10475421000265431
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVRVKKIGVDQSTF 73 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~-------~~~gv~~~~i~~~~~~~ 73 (134)
T Consensus 1 Ms-~~~~~~Ia~sgl~Aqr~Rm~via~NiANa~tt~~~-~g~~Yr~k~~vf~~~~~~~~~~~~~~~gV~v~~i~~~~~~~ 78 (138)
T PRK12631 1 MS-LFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSS-VDKTYRARHPIFEAEMAKAQSQQQASQGVAVKGIVESDKPL 78 (138)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
T ss_conf 96-26678699999999999999999877634767889-99987312211135543322036788874787776179861
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 79 ~~~YdP~hP~AD~~GyV~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m~~~aL~Igk 138 (138)
T PRK12631 79 LKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK 138 (138)
T ss_pred CCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 112089999988788884489888999999999999999999999999999999997459