HHsearch alignment for GI: 254780380 and conserved domain: PRK12631

>PRK12631 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00  E-value=0  Score=290.51  Aligned_cols=131  Identities=36%  Similarity=0.551  Sum_probs=122.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH-------HCCCCCCCEECCCCCCC
Q ss_conf             90478888521568999999989888753125555667543320110001234322-------10475421000265431
Q gi|254780380|r    1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVRVKKIGVDQSTF   73 (134)
Q Consensus         1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~-------~~~gv~~~~i~~~~~~~   73 (134)
T Consensus         1 Ms-~~~~~~Ia~sgl~Aqr~Rm~via~NiANa~tt~~~-~g~~Yr~k~~vf~~~~~~~~~~~~~~~gV~v~~i~~~~~~~   78 (138)
T PRK12631          1 MS-LFNIFDVAGSGMSAQSVRLNTTASNIANADSVSSS-VDKTYRARHPIFEAEMAKAQSQQQASQGVAVKGIVESDKPL   78 (138)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCEEEEHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
T ss_conf             96-26678699999999999999999877634767889-99987312211135543322036788874787776179861


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             000143211125023333056109999999999999999999999999999999999646
Q gi|254780380|r   74 VEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        74 ~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
T Consensus        79 ~~~YdP~hP~AD~~GyV~~pNVd~~~EMvdm~~A~RsYeANv~~~~~ak~m~~~aL~Igk  138 (138)
T PRK12631         79 LKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAKSMLQQTLRMGK  138 (138)
T ss_pred             CCEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             112089999988788884489888999999999999999999999999999999997459