HHsearch alignment for GI: 254780380 and conserved domain: PRK12632
>PRK12632 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=100.00 E-value=0 Score=281.48 Aligned_cols=126 Identities=42% Similarity=0.651 Sum_probs=119.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH---HCCCCCCCEECCCCCCCCCCC
Q ss_conf 90478888521568999999989888753125555667543320110001234322---104754210002654310001
Q gi|254780380|r 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---GSGGVRVKKIGVDQSTFVEEF 77 (134)
Q Consensus 1 m~~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~---~~~gv~~~~i~~~~~~~~~~y 77 (134)
T Consensus 1 M~d~~~~~~Ia~Sgl~Aq~~Rl~~iA~NiANa~t~~-------y~~k~v~f~~~~~~~~~~~~v~v~~v~~d~~~~~~~Y 73 (130)
T PRK12632 1 MTDFSKSLSVSASGMRAQALRLRHVSENIANADTPG-------YRRKTVSFQEERDFGDGVGLVSTGPVRLDRSELPRIY 73 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCEEEECCCCCCCCCCEEECCEECCCCCCCCCC
T ss_conf 903889999999999999999999998743368876-------4334440001245567877547535022776400024
Q ss_pred CCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 43211125023333056109999999999999999999999999999999999646
Q gi|254780380|r 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 78 ~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 74 dP~hP~AD~~GyV~~pnVd~~~EMvdm~~AsRsYeANv~v~~t~k~M~~~~L~i~r 129 (130)
T PRK12632 74 DPSHPLADETGYYDGSNVDLVIEIADAREAQRSYEANLRMFDQARQMSSSLLDLLR 129 (130)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999988667736899788999999999999999999999999999999999842