HHsearch alignment for GI: 254780380 and conserved domain: PRK12685
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=99.49 E-value=3.6e-13 Score=87.45 Aligned_cols=110 Identities=20% Similarity=0.242 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 47888852156899999998988875312555566754332011000123432210475421000265431000143211
Q gi|254780380|r 3 YLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHP 82 (134)
Q Consensus 3 ~l~~ai~Ia~SgL~Aq~~Rl~~iA~NIANa~T~~~~~~~~~y~~~~v~~~~~~~~~~gv~~~~i~~~~~~~~~~y~P~~p 82 (134)
T Consensus 4 ~~d~~~~~~~~aLd~~~~Rq~via~NIANadTPg-------YKakdl~F~~~l~~~~~~~~~----~~~~~~~~~~~~~~ 72 (116)
T PRK12685 4 NLDAALGVHPQTLDFRVERSKVLASNLANAETPG-------YKARDLDFKAVMSQINAGMQP----KQQYELSYRVPYQN 72 (116)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCCHHHHHHHHHCCCCC----CCCCCCCCCCCCCC
T ss_conf 3898865789999999999999986033168999-------876658899999998568998----87877541689886
Q ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 12502333305610999999999999999999999999999999999
Q gi|254780380|r 83 VANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129 (134)
Q Consensus 83 ~Ad~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l 129 (134)
T Consensus 73 ~~DG------N~Vdld~Em~~~aeN~l~Y~a~~~~l~~~~~~lk~AI 113 (116)
T PRK12685 73 SADG------NTVELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAI 113 (116)
T ss_pred CCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999------8537899999999999999999999999999999986