HHsearch alignment for GI: 254780380 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=98.98 E-value=5.5e-11 Score=76.15 Aligned_cols=47 Identities=21% Similarity=0.324 Sum_probs=44.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 23333056109999999999999999999999999999999999646
Q gi|254780380|r 87 SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 87 ~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
T Consensus 831 ~SaLEMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~TLlqLKQ 877 (877)
T TIGR02489 831 TSALEMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLLQLKQ 877 (877)
T ss_pred CCCCCCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 45210010046664301277651411456403015789999974059