HHsearch alignment for GI: 254780380 and conserved domain: pfam06429
>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=99.09 E-value=1.4e-10 Score=74.09 Aligned_cols=39 Identities=33% Similarity=0.556 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 561099999999999999999999999999999999996
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i 131 (134)
T Consensus 1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~~ 39 (39)
T pfam06429 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39 (39)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988789999999999999899999998899999998763