Query         gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 134
No_of_seqs    128 out of 1991
Neff          6.5 
Searched_HMMs 33803
Date          Wed Jun  1 12:48:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780380.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1ucu_A Phase 1 flagellin; fla  93.4    0.13   4E-06   27.4   4.6   42   92-133    39-80  (80)
  2 >1ory_B Flagellin; flagellar c  90.3    0.15 4.4E-06   27.1   2.0   41   93-133    15-55  (55)
  3 >2d4y_A HAP1, flagellar HOOK-a  27.0      15 0.00046   16.7   0.0   16   15-30    227-242 (376)
  4 >2d9s_A CBL E3 ubiquitin prote  18.5      44  0.0013   14.4   0.9   39   95-133     7-45  (53)
  5 >2ooa_A E3 ubiquitin-protein l  16.1      38  0.0011   14.7   0.1   39   95-133     9-47  (52)
  6 >2oo9_A E3 ubiquitin-protein l  12.8      73  0.0022   13.2   0.8   38   96-133     3-40  (46)
  7 >2qh5_A PMI, ALGA, mannose-6-p  12.7      74  0.0022   13.2   0.8   19   85-103    15-33  (41)
  8 >2juj_A E3 ubiquitin-protein l  11.6      50  0.0015   14.1  -0.3   38   96-133     6-43  (56)
  9 >1wlg_A Flagellar HOOK protein   8.9      65  0.0019   13.5  -0.5   14   85-98     45-58  (59)
 10 >1rz4_A Eukaryotic translation   7.9 1.4E+02  0.0042   11.7   2.9   36   73-121    17-54  (155)

No 1  
>>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494)
Probab=93.37  E-value=0.13  Score=27.36  Aligned_cols=42  Identities=21%  Similarity=0.303  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             056109999999999999999999999999999999999646
Q gi|254780380|r   92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
                      ..++|.+.||+++...+-..++...++..+.++-+..|.|+|
T Consensus        39 sADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vl~LLq   80 (80)
T 1ucu_A           39 SADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR   80 (80)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf             821319999999999999999999999997416789998409


No 2  
>>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:)
Probab=90.30  E-value=0.15  Score=27.10  Aligned_cols=41  Identities=20%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             56109999999999999999999999999999999999646
Q gi|254780380|r   93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
                      -++|.+.||+++...+-..++...++..+.++-+..|.|+|
T Consensus        15 ~DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vL~LLq   55 (55)
T 1ory_B           15 RNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR   55 (55)
T ss_dssp             -CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf             40559999999999999999999999998526789997519


No 3  
>>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} (A:1-268,A:356-463)
Probab=26.96  E-value=15  Score=16.71  Aligned_cols=16  Identities=13%  Similarity=0.119  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9999999898887531
Q gi|254780380|r   15 LAVQSARMQIISENIA   30 (134)
Q Consensus        15 L~Aq~~Rl~~iA~NIA   30 (134)
                      +.-.+.+|+..|..++
T Consensus       227 l~~~~~~Ld~lA~~la  242 (376)
T 2d4y_A          227 LDQTRNTLGQLALAFA  242 (376)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             2456778999999999


No 4  
>>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=18.48  E-value=44  Score=14.38  Aligned_cols=39  Identities=13%  Similarity=0.182  Sum_probs=32.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             109999999999999999999999999999999999646
Q gi|254780380|r   95 VNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        95 Vd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
                      .++..|...+|..-.+||+-.+++..++.-.+-+-+|+|
T Consensus         7 enl~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA~~ILr   45 (53)
T 2d9s_A            7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR   45 (53)
T ss_dssp             SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             110189999998553399999999998621999999999


No 5  
>>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:)
Probab=16.10  E-value=38  Score=14.70  Aligned_cols=39  Identities=13%  Similarity=0.185  Sum_probs=32.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             109999999999999999999999999999999999646
Q gi|254780380|r   95 VNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        95 Vd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
                      .++..|...+|.--.+||.-.+++..++.-.+.+-+|+|
T Consensus         9 enl~~eI~~Lm~~GYs~~dv~rAL~Ia~NniemA~~ILr   47 (52)
T 2ooa_A            9 ENVDAKIAKLXGEGYAFEEVKRALEIAQNNVEVARSILR   47 (52)
T ss_dssp             --CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             200289999998554399999999998621999999999


No 6  
>>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:)
Probab=12.77  E-value=73  Score=13.21  Aligned_cols=38  Identities=11%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             09999999999999999999999999999999999646
Q gi|254780380|r   96 NVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        96 d~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
                      .+..|...+|..-.+||+-.+++..++.-.+.+-+|+|
T Consensus         3 ~l~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA~~ILr   40 (46)
T 2oo9_A            3 QLSSEIENLXSQGYSYQDIQKALVIAQNNIEXAKNILR   40 (46)
T ss_dssp             HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             20389999998677699999999998710999999999


No 7  
>>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori 26695} (A:148-188)
Probab=12.69  E-value=74  Score=13.20  Aligned_cols=19  Identities=11%  Similarity=0.335  Sum_probs=15.4

Q ss_pred             CHHHHHHCCCCHHHHHHHH
Q ss_conf             5023333056109999999
Q gi|254780380|r   85 NASGIVKYPNVNVLVETAD  103 (134)
Q Consensus        85 d~~G~v~~snVd~~~Em~~  103 (134)
                      .-..|||.|+-+.+++++.
T Consensus        15 ~V~~F~EKPd~~~A~~~i~   33 (41)
T 2qh5_A           15 DVKRFIEKPSLDKAIEFQK   33 (41)
T ss_dssp             BCSEEEESCCHHHHHHHHH
T ss_pred             CHHHHHHCCCHHHHHHHHH
T ss_conf             3455543444144688763


No 8  
>>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:)
Probab=11.62  E-value=50  Score=14.08  Aligned_cols=38  Identities=11%  Similarity=0.196  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             09999999999999999999999999999999999646
Q gi|254780380|r   96 NVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR  133 (134)
Q Consensus        96 d~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r  133 (134)
                      ++..|...+|.--.+||+-.+++..++.-.+-+-+|+|
T Consensus         6 nl~~eI~~Lm~~GYs~~~V~rAL~Ia~NnvemA~~ILr   43 (56)
T 2juj_A            6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR   43 (56)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             01289999998666599999999998711999999999


No 9  
>>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:47-61,A:219-244,A:282-299)
Probab=8.89  E-value=65  Score=13.47  Aligned_cols=14  Identities=21%  Similarity=0.349  Sum_probs=11.0

Q ss_pred             CHHHHHHCCCCHHH
Q ss_conf             50233330561099
Q gi|254780380|r   85 NASGIVKYPNVNVL   98 (134)
Q Consensus        85 d~~G~v~~snVd~~   98 (134)
                      --.|.++.||||+.
T Consensus        45 lt~gale~snvdls   58 (59)
T 1wlg_A           45 LTNGALEASNVDLS   58 (59)
T ss_dssp             CSSCEEEEC-----
T ss_pred             EEECCEEHHHCCCC
T ss_conf             85174422332626


No 10 
>>1rz4_A Eukaryotic translation initiation factor 3 subunit 11; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} (A:1-127,A:199-226)
Probab=7.88  E-value=1.4e+02  Score=11.72  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q ss_conf             100014321112502333305610999999999999999--9999999999
Q gi|254780380|r   73 FVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLY--MANLQTIKQS  121 (134)
Q Consensus        73 ~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~y--ean~~~~~~~  121 (134)
                      +.-+|+|.             |+...++-++.....+.|  +||+.+++..
T Consensus        17 gidRYNPe-------------nL~~LE~YV~~Q~~en~YDleANLalLKLY   54 (155)
T 1rz4_A           17 GIDRYNPE-------------NLATLERYVETQAKENAYDLEANLAVLKLY   54 (155)
T ss_dssp             SGGGGCGG-------------GHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             CCCCCCHH-------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             74337878-------------889999999999861332498889998665


Done!