Query gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] Match_columns 134 No_of_seqs 128 out of 1991 Neff 6.5 Searched_HMMs 33803 Date Wed Jun 1 12:48:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780380.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1ucu_A Phase 1 flagellin; fla 93.4 0.13 4E-06 27.4 4.6 42 92-133 39-80 (80) 2 >1ory_B Flagellin; flagellar c 90.3 0.15 4.4E-06 27.1 2.0 41 93-133 15-55 (55) 3 >2d4y_A HAP1, flagellar HOOK-a 27.0 15 0.00046 16.7 0.0 16 15-30 227-242 (376) 4 >2d9s_A CBL E3 ubiquitin prote 18.5 44 0.0013 14.4 0.9 39 95-133 7-45 (53) 5 >2ooa_A E3 ubiquitin-protein l 16.1 38 0.0011 14.7 0.1 39 95-133 9-47 (52) 6 >2oo9_A E3 ubiquitin-protein l 12.8 73 0.0022 13.2 0.8 38 96-133 3-40 (46) 7 >2qh5_A PMI, ALGA, mannose-6-p 12.7 74 0.0022 13.2 0.8 19 85-103 15-33 (41) 8 >2juj_A E3 ubiquitin-protein l 11.6 50 0.0015 14.1 -0.3 38 96-133 6-43 (56) 9 >1wlg_A Flagellar HOOK protein 8.9 65 0.0019 13.5 -0.5 14 85-98 45-58 (59) 10 >1rz4_A Eukaryotic translation 7.9 1.4E+02 0.0042 11.7 2.9 36 73-121 17-54 (155) No 1 >>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} (A:1-40,A:455-494) Probab=93.37 E-value=0.13 Score=27.36 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=39.3 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 056109999999999999999999999999999999999646 Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134) ..++|.+.||+++...+-..++...++..+.++-+..|.|+| T Consensus 39 sADaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vl~LLq 80 (80) T 1ucu_A 39 SADSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 80 (80) T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC T ss_pred CCHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC T ss_conf 821319999999999999999999999997416789998409 No 2 >>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus} (B:) Probab=90.30 E-value=0.15 Score=27.10 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=38.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 56109999999999999999999999999999999999646 Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134) -++|.+.||+++...+-..++...++..+.++-+..|.|+| T Consensus 15 ~DaD~A~E~~~~tk~qIL~Qa~~amLaQAN~~pq~vL~LLq 55 (55) T 1ory_B 15 RNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55 (55) T ss_dssp -CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHC- T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC T ss_conf 40559999999999999999999999998526789997519 No 3 >>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium} (A:1-268,A:356-463) Probab=26.96 E-value=15 Score=16.71 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999898887531 Q gi|254780380|r 15 LAVQSARMQIISENIA 30 (134) Q Consensus 15 L~Aq~~Rl~~iA~NIA 30 (134) +.-.+.+|+..|..++ T Consensus 227 l~~~~~~Ld~lA~~la 242 (376) T 2d4y_A 227 LDQTRNTLGQLALAFA 242 (376) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 2456778999999999 No 4 >>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=18.48 E-value=44 Score=14.38 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=32.7 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 109999999999999999999999999999999999646 Q gi|254780380|r 95 VNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 95 Vd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134) .++..|...+|..-.+||+-.+++..++.-.+-+-+|+| T Consensus 7 enl~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA~~ILr 45 (53) T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR 45 (53) T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 110189999998553399999999998621999999999 No 5 >>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A (A:) Probab=16.10 E-value=38 Score=14.70 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=32.5 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 109999999999999999999999999999999999646 Q gi|254780380|r 95 VNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 95 Vd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134) .++..|...+|.--.+||.-.+++..++.-.+.+-+|+| T Consensus 9 enl~~eI~~Lm~~GYs~~dv~rAL~Ia~NniemA~~ILr 47 (52) T 2ooa_A 9 ENVDAKIAKLXGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52) T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 200289999998554399999999998621999999999 No 6 >>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} (A:) Probab=12.77 E-value=73 Score=13.21 Aligned_cols=38 Identities=11% Similarity=0.216 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 09999999999999999999999999999999999646 Q gi|254780380|r 96 NVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 96 d~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134) .+..|...+|..-.+||+-.+++..++.-.+.+-+|+| T Consensus 3 ~l~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA~~ILr 40 (46) T 2oo9_A 3 QLSSEIENLXSQGYSYQDIQKALVIAQNNIEXAKNILR 40 (46) T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 20389999998677699999999998710999999999 No 7 >>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori 26695} (A:148-188) Probab=12.69 E-value=74 Score=13.20 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=15.4 Q ss_pred CHHHHHHCCCCHHHHHHHH Q ss_conf 5023333056109999999 Q gi|254780380|r 85 NASGIVKYPNVNVLVETAD 103 (134) Q Consensus 85 d~~G~v~~snVd~~~Em~~ 103 (134) .-..|||.|+-+.+++++. T Consensus 15 ~V~~F~EKPd~~~A~~~i~ 33 (41) T 2qh5_A 15 DVKRFIEKPSLDKAIEFQK 33 (41) T ss_dssp BCSEEEESCCHHHHHHHHH T ss_pred CHHHHHHCCCHHHHHHHHH T ss_conf 3455543444144688763 No 8 >>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} (A:) Probab=11.62 E-value=50 Score=14.08 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=28.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 09999999999999999999999999999999999646 Q gi|254780380|r 96 NVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134) Q Consensus 96 d~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134) ++..|...+|.--.+||+-.+++..++.-.+-+-+|+| T Consensus 6 nl~~eI~~Lm~~GYs~~~V~rAL~Ia~NnvemA~~ILr 43 (56) T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 43 (56) T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 01289999998666599999999998711999999999 No 9 >>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} (A:47-61,A:219-244,A:282-299) Probab=8.89 E-value=65 Score=13.47 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=11.0 Q ss_pred CHHHHHHCCCCHHH Q ss_conf 50233330561099 Q gi|254780380|r 85 NASGIVKYPNVNVL 98 (134) Q Consensus 85 d~~G~v~~snVd~~ 98 (134) --.|.++.||||+. T Consensus 45 lt~gale~snvdls 58 (59) T 1wlg_A 45 LTNGALEASNVDLS 58 (59) T ss_dssp CSSCEEEEC----- T ss_pred EEECCEEHHHCCCC T ss_conf 85174422332626 No 10 >>1rz4_A Eukaryotic translation initiation factor 3 subunit 11; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} (A:1-127,A:199-226) Probab=7.88 E-value=1.4e+02 Score=11.72 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=0.0 Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHH Q ss_conf 100014321112502333305610999999999999999--9999999999 Q gi|254780380|r 73 FVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLY--MANLQTIKQS 121 (134) Q Consensus 73 ~~~~y~P~~p~Ad~~G~v~~snVd~~~Em~~m~~a~r~y--ean~~~~~~~ 121 (134) +.-+|+|. |+...++-++.....+.| +||+.+++.. T Consensus 17 gidRYNPe-------------nL~~LE~YV~~Q~~en~YDleANLalLKLY 54 (155) T 1rz4_A 17 GIDRYNPE-------------NLATLERYVETQAKENAYDLEANLAVLKLY 54 (155) T ss_dssp SGGGGCGG-------------GHHHHHHHHHHHHHHTCCCHHHHHHHHHHH T ss_pred CCCCCCHH-------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 74337878-------------889999999999861332498889998665 Done!