Query gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 134
No_of_seqs 128 out of 1991
Neff 6.5
Searched_HMMs 23785
Date Mon May 30 10:36:23 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780380.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a69_A Flagellar HOOK protein 99.8 1.2E-20 4.9E-25 125.0 8.8 47 86-132 356-402 (402)
2 1ucu_A Phase 1 flagellin; flag 93.5 0.085 3.6E-06 27.6 4.5 43 91-133 452-494 (494)
3 1ory_B Flagellin; flagellar ch 85.2 0.34 1.4E-05 24.5 2.0 42 92-133 14-55 (55)
4 1wlg_A Flagellar HOOK protein 68.4 1.2 5.2E-05 21.6 0.8 24 76-99 274-299 (299)
5 2d4y_A HAP1, flagellar HOOK-as 27.0 11 0.00045 16.7 0.0 14 16-29 228-241 (463)
6 2ooa_A E3 ubiquitin-protein li 17.3 24 0.001 15.0 0.1 39 95-133 9-47 (52)
7 2d9s_A CBL E3 ubiquitin protei 17.3 31 0.0013 14.4 0.7 39 93-133 7-45 (53)
8 2oo9_A E3 ubiquitin-protein li 15.6 39 0.0016 13.9 0.9 38 96-133 3-40 (46)
9 2juj_A E3 ubiquitin-protein li 9.7 45 0.0019 13.5 -0.3 38 96-133 6-43 (56)
10 1o98_A 2,3-bisphosphoglycerate 8.8 91 0.0038 11.9 2.2 34 100-133 400-433 (511)
No 1
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=99.83 E-value=1.2e-20 Score=124.99 Aligned_cols=47 Identities=30% Similarity=0.432 Sum_probs=44.0
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02333305610999999999999999999999999999999999964
Q gi|254780380|r 86 ASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132 (134)
Q Consensus 86 ~~G~v~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~ 132 (134)
.+|++|.||||+.+||++||..||+|+||.|+|.+.|+|++++|+|+
T Consensus 356 ~~~~lE~S~V~ldeEmtnli~~Q~aY~A~akvitt~demld~linlk 402 (402)
T 3a69_A 356 TNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNLR 402 (402)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 10754511479999999999999999997526649999999997059
No 2
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=93.46 E-value=0.085 Score=27.58 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=39.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3056109999999999999999999999999999999999646
Q gi|254780380|r 91 KYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 91 ~~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+--+.|.++|++++...|-.+||-..++..+++.-+..|.|+|
T Consensus 452 ~i~DaD~a~e~~~l~~~qi~~Qaa~~~laqAn~~~q~vl~Ll~ 494 (494)
T 1ucu_A 452 RIEDSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR 494 (494)
T ss_dssp HHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
T ss_conf 5771409999999999999999999999997526789998409
No 3
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus}
Probab=85.18 E-value=0.34 Score=24.48 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 056109999999999999999999999999999999999646
Q gi|254780380|r 92 YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 92 ~snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
--++|.+.||+++...+-..++...++..+..+-+..|.|+|
T Consensus 14 I~DaD~A~E~~~lak~qIL~qa~~amLaQAN~~~q~vL~LLq 55 (55)
T 1ory_B 14 IRNVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVLQLLR 55 (55)
T ss_dssp --CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHC
T ss_conf 541559999999999999999999999998426789997519
No 4
>1wlg_A Flagellar HOOK protein FLGE; EAR-& motif, structural protein; 1.80A {Salmonella typhimurium} SCOP: b.152.1.1 PDB: 2bgy_A 2bgz_A
Probab=68.39 E-value=1.2 Score=21.58 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=16.0
Q ss_pred CCCCCCC--CCCHHHHHHCCCCHHHH
Q ss_conf 0143211--12502333305610999
Q gi|254780380|r 76 EFDPGHP--VANASGIVKYPNVNVLV 99 (134)
Q Consensus 76 ~y~P~~p--~Ad~~G~v~~snVd~~~ 99 (134)
...|+.- ..-..|.+|.|||||++
T Consensus 274 ~g~~g~~g~G~i~~g~LE~SNVDla~ 299 (299)
T 1wlg_A 274 LGTAGSGNFGKLTNGALEASNVDLSK 299 (299)
T ss_dssp EECTTBTTBCCCSSCEEEEC------
T ss_pred ECCCCCCCCEEEEECCEEHHHCCCCC
T ss_conf 24799888233852744223325268
No 5
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=27.04 E-value=11 Score=16.72 Aligned_cols=14 Identities=0% Similarity=-0.016 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999989888753
Q gi|254780380|r 16 AVQSARMQIISENI 29 (134)
Q Consensus 16 ~Aq~~Rl~~iA~NI 29 (134)
.-.+.+|+..|..+
T Consensus 228 ~~~~~~Ld~la~~l 241 (463)
T 2d4y_A 228 DQTRNTLGQLALAF 241 (463)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 88888888899999
No 6
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=17.33 E-value=24 Score=14.95 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 109999999999999999999999999999999999646
Q gi|254780380|r 95 VNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 95 Vd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.++..|...+|.--.+||.-.+++..++.-.+.+-+|+|
T Consensus 9 enl~~eI~~Lm~~GYs~~dv~rAL~Ia~NniemA~~ILr 47 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 422179999998665599999999998622999999999
No 7
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=17.26 E-value=31 Score=14.37 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 56109999999999999999999999999999999999646
Q gi|254780380|r 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 93 snVd~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
.||| .|...+|.--.+||.-.+++..++.-.+.+-+|+|
T Consensus 7 e~~~--~eI~~Lm~~GYs~~~v~~AL~Ia~NniemA~~ILr 45 (53)
T 2d9s_A 7 GQLS--SEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp SCSH--HHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHH--HHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 1101--89999998554499999999998611999999999
No 8
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=15.63 E-value=39 Score=13.85 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 09999999999999999999999999999999999646
Q gi|254780380|r 96 NVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 96 d~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
++..|...+|..-.+||.-.+++..++.-.+.+-+|+|
T Consensus 3 ~~~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA~~ILr 40 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 40 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 20389999998677699999999998621999999999
No 9
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=9.70 E-value=45 Score=13.52 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 09999999999999999999999999999999999646
Q gi|254780380|r 96 NVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 96 d~~~Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
++..|...+|.--.+||.-.+++..++.-.+.+-+|+|
T Consensus 6 ~~~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA~~ILr 43 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 43 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 02289999998554499999999998711999999999
No 10
>1o98_A 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; isomerase, alpha/beta-type structure; HET: 2PG; 1.4A {Bacillus stearothermophilus} SCOP: c.105.1.1 c.76.1.3 PDB: 1ejj_A* 1eqj_A* 1o99_A* 2ify_A
Probab=8.78 E-value=91 Score=11.93 Aligned_cols=34 Identities=9% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999999999999999999646
Q gi|254780380|r 100 ETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133 (134)
Q Consensus 100 Em~~m~~a~r~yean~~~~~~~~~m~~~~l~i~r 133 (134)
+-.|+.-....+++-+++|+..|.+++++|+.++
T Consensus 400 ~~~D~aGH~g~~~~k~~aIE~vD~~ig~il~~l~ 433 (511)
T 1o98_A 400 ANPDMVGHSGKLEPTIKAVEAVDECLGKVVDAIL 433 (511)
T ss_dssp CHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6720204478999999999999999999999998
Done!