RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod
protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
(134 letters)
>gnl|CDD|139220 PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 138
Score = 184 bits (469), Expect = 7e-48
Identities = 76/135 (56%), Positives = 102/135 (75%), Gaps = 3/135 (2%)
Query: 2 DYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---GS 58
D L+AS+ IA+SGL QS R++++SEN+ANA++TG TPG+DPY RKT++F + G+
Sbjct: 3 DPLLASSRIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTVTFRAELDRAAGA 62
Query: 59 GGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTI 118
VRVK+IGVD + F E+DPG+P A+ +G VK PNVN+L+E ADMRE NR Y ANLQ I
Sbjct: 63 ASVRVKEIGVDTAPFRVEYDPGNPAADENGYVKLPNVNMLIEMADMREANRSYEANLQVI 122
Query: 119 KQSHDMMTTTLDLLR 133
KQ+ M+ T+DLLR
Sbjct: 123 KQARAMVAMTIDLLR 137
>gnl|CDD|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 135
Score = 164 bits (418), Expect = 6e-42
Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 4/133 (3%)
Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM---HGSGG 60
L +S +IA SGL+ QS R+ +IS NIANA +T G DPYRRK + F + G+GG
Sbjct: 3 LFSSFNIAGSGLSAQSQRLNVISSNIANADSTAAPDG-DPYRRKQVVFAAELDPGQGTGG 61
Query: 61 VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120
V+V KI DQS F +DPGHP A+A G VKYPNVNV+VE DM +R Y AN++ +
Sbjct: 62 VKVAKIVEDQSPFKLVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNA 121
Query: 121 SHDMMTTTLDLLR 133
+ MM TL + +
Sbjct: 122 AKSMMQKTLTIGQ 134
>gnl|CDD|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC. This model
represents FlgC, one of several components of bacterial
flagella that share a domain described by pfam model
pfam00460. FlgC is part of the basal body.
Length = 135
Score = 128 bits (324), Expect = 4e-31
Identities = 56/131 (42%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH-------GSGGVR 62
++ S L+ Q RM ++S N+ANA +T TP DPYRR+ FE + G GV+
Sbjct: 6 VSASALSAQRVRMNVVSSNLANADST-RTPAGDPYRRRRPVFEAELFQDRASRPGGSGVK 64
Query: 63 VKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSH 122
V KI D S F +DP HP A+A G VK PNVNV+ E DM E +R Y AN+Q +
Sbjct: 65 VAKIVEDDSPFKLVYDPTHPDADAEGYVKMPNVNVVEEMVDMIEASRSYEANVQVFNTAK 124
Query: 123 DMMTTTLDLLR 133
M TL++ R
Sbjct: 125 SMFLRTLEIGR 135
>gnl|CDD|183637 PRK12632, flgC, flagellar basal body rod protein FlgC; Provisional.
Length = 130
Score = 110 bits (276), Expect = 1e-25
Identities = 57/136 (41%), Positives = 80/136 (58%), Gaps = 10/136 (7%)
Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH---G 57
M S ++ SG+ Q+ R++ +SENIANA DTPG YRRKT+SF+E G
Sbjct: 1 MTDFSKSLSVSASGMRAQALRLRHVSENIANA----DTPG---YRRKTVSFQEARDFDPG 53
Query: 58 SGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQT 117
SG V + +D+S +DP HP+A+ +G NV+++VE AD RE R Y ANL+
Sbjct: 54 SGLVSTGPVRLDRSELPRIYDPSHPLADETGYYDGSNVDLVVEIADAREAQRSYEANLRM 113
Query: 118 IKQSHDMMTTTLDLLR 133
Q+ M ++ LDLLR
Sbjct: 114 FDQARQMSSSLLDLLR 129
>gnl|CDD|183635 PRK12630, flgC, flagellar basal body rod protein FlgC; Provisional.
Length = 143
Score = 94.9 bits (236), Expect = 6e-21
Identities = 51/137 (37%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHG--------- 57
+ I+ SGL+ + RM I+ NIANA TT G PY+RK F+E ++
Sbjct: 6 TMRISASGLSAERLRMDTIASNIANATTTRTADGG-PYKRKIAVFQENLNKELNKKNGAY 64
Query: 58 ---SGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMAN 114
GV+ I D+S F + +DP HP A+ G V PNVNVL E ADM + R Y AN
Sbjct: 65 EKKLYGVKAVGIVEDKSPFRKVYDPSHPDADEEGYVSMPNVNVLNEMADMMASTRSYEAN 124
Query: 115 LQTIKQSHDMMTTTLDL 131
+ I M + L++
Sbjct: 125 VTAINAEKSMFSKALEI 141
>gnl|CDD|183636 PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional.
Length = 138
Score = 72.3 bits (177), Expect = 4e-14
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM-------HGSGGVR 62
+A SG++ QS R+ + NIANA + + YR + FE M S GV
Sbjct: 9 VAGSGMSAQSVRLNTTASNIANADSVSSSVD-KTYRARHPIFEAEMAKAQSQQQASQGVA 67
Query: 63 VKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSH 122
VK I ++E+ P HP+A+A G + PNVNV+ E ADM +R Y N+Q + +
Sbjct: 68 VKGIVESDKPLLKEYSPDHPMADADGFIYKPNVNVMEEMADMISASRSYQMNVQVAEAAK 127
Query: 123 DMMTTTLDL 131
M+ TL +
Sbjct: 128 SMLQQTLRM 136
>gnl|CDD|180702 PRK06802, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 141
Score = 60.2 bits (146), Expect = 1e-10
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM--------HGSGGV 61
IA S + Q+ R+ ++ N+ANA + + + Y+ ++ F V G G
Sbjct: 9 IAGSAMTAQTIRLNTVASNLANAESPAASA-ATAYKARSPVFAAVYSARTLADPRGVQGA 67
Query: 62 RVKKIGVDQST-FVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120
+V+ + V Q V+ ++P +P+AN G V YP+VNV+ E ADM +R + N++ +
Sbjct: 68 QVQVLDVVQVGGSVKRYEPNNPLANPQGYVFYPDVNVVEEMADMMSASRSFETNVEVLNS 127
Query: 121 SHDMMTTTLDL 131
M + L L
Sbjct: 128 VKSMQQSLLKL 138
>gnl|CDD|183634 PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.
Length = 135
Score = 56.2 bits (135), Expect = 3e-09
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTIS--FEEVMHGSG----GVRV 63
+A S L QS R+ I+ N+ANA + GS K I F+ V V
Sbjct: 9 VAGSALHAQSVRLSTIASNLANADSVA---GSAEATYKPIEPIFQAQQSRQDPSLTSVNV 65
Query: 64 KKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHD 123
K+I + + ++PGHP+A+A G V P+V+ + + +M +R Y A ++ + + +
Sbjct: 66 KEITTTNAPPIRRYEPGHPLADADGYVFSPDVDPVSQMVNMISASRNYQAGVEMLNTAKE 125
Query: 124 MMTTTLDLLR 133
+ TL + R
Sbjct: 126 LALATLTMGR 135
>gnl|CDD|79089 PRK12628, flgC, flagellar basal body rod protein FlgC; Provisional.
Length = 140
Score = 47.5 bits (112), Expect = 1e-06
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS---------GG 60
IA S + ++ R+ + N++NA +P + Y+ K F+ V + G
Sbjct: 9 IAASAMTAETVRLTTSAGNMSNANVEAGSP-DEVYQAKYPVFKSVQENANQWMGEQIKAG 67
Query: 61 VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120
V++ I + +DP P+A+ G V N+N + E A++ +R Y N++ +
Sbjct: 68 VKLDGIYESDAEPHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNT 127
Query: 121 SHDMMTTTLDL 131
+ +M TL L
Sbjct: 128 TKQLMQRTLQL 138
>gnl|CDD|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins.
This model encompasses three closely related flagellar
proteins usually denoted FlgE, FlgF and FlgG. The names
have often been mis-assigned, however. Three equivalog
models, TIGR02489, TIGR02490 and TIGR00488,
respectively, separate the individual forms into three
genome-context consistent groups. The major differences
between these genes are architectural, with variable
central sections between relatively conserved N- and
C-terminal domains. More distantly related are two
other flagellar apparatus familis, FlgC (TIGR01395)
which consists of little else but the N-and C-terminal
domains and FlgK (TIGR02492) with a substantial but
different central domain.
Length = 231
Score = 46.1 bits (110), Expect = 3e-06
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 15/71 (21%)
Query: 9 HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS--------GG 60
+ A SGL QS+ + +I+ NIAN TTG ++R F++++ S GG
Sbjct: 4 YTALSGLNAQSSALDVIANNIANVNTTG-------FKRSRAEFQDLLSQSGSGSGQVGGG 56
Query: 61 VRVKKIGVDQS 71
VR + D S
Sbjct: 57 VRASGVAQDFS 67
>gnl|CDD|180198 PRK05682, flgE, flagellar hook protein FlgE; Validated.
Length = 407
Score = 44.1 bits (105), Expect = 1e-05
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 9 HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIG 67
+ A SGL S R+ +I NIANA TTG ++ F ++ S G ++G
Sbjct: 4 NTAVSGLNAASNRLDVIGNNIANANTTG-------FKSSRAEFADLYANSAGTNPTQVG 55
Score = 30.2 bits (69), Expect = 0.16
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
NV++ E +M R Y AN +TIK ++ T ++L
Sbjct: 369 NVDLSTELVNMIVAQRNYQANAKTIKTQDQLLQTLVNL 406
>gnl|CDD|180196 PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 137
Score = 43.7 bits (104), Expect = 2e-05
Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 17/140 (12%)
Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60
+D + L +++ R ++I+ NIANA DTPG Y+ + I FE V+
Sbjct: 2 LDSFDKALRFLQEALNLRAQRQEVIASNIANA----DTPG---YKARDIDFESVLAVMIF 54
Query: 61 VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYP----------NVNVLVETADMRETNRL 110
R G++ + E P + + Y V++ VE + + + +
Sbjct: 55 GRQSGSGLELARTSERHIPAQATTSPKAELLYRDPHQPSNDGNTVDMDVERTEFAKNSIM 114
Query: 111 YMANLQTIKQSHDMMTTTLD 130
Y A L + + + +
Sbjct: 115 YQALLTALNGKFKGLMSVIQ 134
>gnl|CDD|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 262
Score = 43.7 bits (104), Expect = 2e-05
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Query: 9 HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
IA +G+A Q +++IS NIAN TTG ++R+ F++++
Sbjct: 5 SIAATGMAAQQLNVEVISNNIANMNTTG-------FKRQRAEFQDLL 44
Score = 30.3 bits (69), Expect = 0.17
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133
NV+V+ E D+ R Y N + I + +M+ TT LR
Sbjct: 223 NVDVVKEITDLITAQRAYEMNSKVITAADEMLQTTSQNLR 262
>gnl|CDD|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG,
Gram-negative bacteria. This family consists of the
FlgG protein of the flagellar apparatus in the
Proteobacteria and spirochetes.
Length = 259
Score = 42.0 bits (99), Expect = 5e-05
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56
+ A +G+ Q M +IS N+AN TTG +++ FE++++
Sbjct: 1 ALWTAATGMNAQQTNMDVISNNLANVNTTG-------FKKDRAEFEDLLY 43
Score = 33.1 bits (76), Expect = 0.021
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 78 DPGHPVANASGIVKY-----PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132
G P + G ++ NVNV+ E DM R Y N + I+ S M+ T LL
Sbjct: 200 QIGTPGLDGFGKLRQGFLEASNVNVVQEMVDMITAQRAYEMNSKAIQASDQMLQTVSQLL 259
>gnl|CDD|162337 TIGR01396, FlgB, flagellar basal-body rod protein FlgB. This
model represents FlgB, one of several components of
bacterial flagella that share a domain described by
pfam model pfam00460. FlgB is part of the basal body.
Length = 131
Score = 38.1 bits (89), Expect = 7e-04
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 14 GLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
L V+S R ++I+ NIAN DTPG Y+ K +SFE +
Sbjct: 11 ALDVRSLRQEVIANNIANV----DTPG---YKAKDVSFEAEL 45
>gnl|CDD|181014 PRK07521, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 483
Score = 37.2 bits (87), Expect = 0.001
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 5 IASA-HIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRV 63
++SA + A SGL S + ++S NIANA T G Y R+ S G G +V
Sbjct: 3 LSSALNTAQSGLTATSRQTSVVSRNIANAGTPG-------YSRREASLVS---GPAGGQV 52
Query: 64 KKIGVDQSTFV 74
I Q +
Sbjct: 53 VGISRAQDPAL 63
>gnl|CDD|183688 PRK12694, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 36.7 bits (85), Expect = 0.002
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56
+ S IA +GL Q A+M +IS N+AN T G ++R FE++++
Sbjct: 1 MNRSLWIAKTGLNAQQAQMDVISNNLANVSTNG-------FKRSRAVFEDLLY 46
Score = 30.9 bits (70), Expect = 0.12
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 79 PGHPVANASGIVKY-----PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTT 127
P N +G + NVNV+ E +M +T R Y N + + S M+
Sbjct: 203 VSQPGLNGAGTLNQGYVEASNVNVVEELVNMIQTQRAYEINSKAVTTSDQMLQR 256
>gnl|CDD|148188 pfam06429, DUF1078, Domain of unknown function (DUF1078). This
family consists of a number of C-terminal domains of
unknown function. This domain seems to be specific to
flagellar basal-body rod and flagellar hook proteins in
which pfam00460 is often present at the extreme N
terminus.
Length = 39
Score = 35.9 bits (84), Expect = 0.003
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 93 PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
NV+++ E ++ E R Y AN + I+ + +M+ T L+L
Sbjct: 1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLNL 39
>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG;
Provisional.
Length = 261
Score = 35.6 bits (83), Expect = 0.005
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
+I + IA +GL Q + +IS N+AN TTG +++ FE+++
Sbjct: 1 MIRALWIAKTGLDAQQTNIDVISNNLANVNTTG-------FKKSRAVFEDLL 45
Score = 29.8 bits (68), Expect = 0.23
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLL 132
NVNV+ E +M R Y N + I + M+ LL
Sbjct: 223 NVNVVEELVNMITGQRAYEMNSKAISTADQMLQYVNQLL 261
>gnl|CDD|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 256
Score = 34.7 bits (80), Expect = 0.008
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 4 LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTI---SFEEVM 55
+I + A SG+ A+ +I+ N+AN T G Y+ + SFE+V+
Sbjct: 1 MIRGLYTAVSGMITLEAKQDVITNNLANVNTVG-------YKSDNLAFKSFEDVL 48
>gnl|CDD|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 34.3 bits (79), Expect = 0.011
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Query: 11 ANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
+ SG+ Q ++ IS N+AN TTG Y+R+ +SF +++
Sbjct: 8 SKSGMNAQQEKLDSISNNLANVNTTG-------YKREDVSFSDLV 45
>gnl|CDD|183630 PRK12623, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 131
Score = 32.5 bits (74), Expect = 0.033
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 14 GLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEE 53
GL S R ++IS NIAN T G Y+R ++FEE
Sbjct: 19 GLDASSYRGKVISNNIANVNTKG-------YKRHYVTFEE 51
>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK.
The flagellar hook-associated protein FlgK of bacterial
flagella has conserved N- and C-terminal domains. The
central region is highly variable in length and
sequence, and often contains substantial runs of
low-complexity sequence. This model is built from an
alignment of FlgK sequences with the central region
excised. Note that several other proteins of the
flagellar apparatus also are homologous in the N- and
C-terminal regions to FlgK, but are excluded from this
model.
Length = 322
Score = 31.9 bits (73), Expect = 0.049
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
IA SGL+ + + S NIANA T G
Sbjct: 5 IAKSGLSASQIALSVTSNNIANANTPG 31
>gnl|CDD|183631 PRK12625, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 132
Score = 31.7 bits (72), Expect = 0.064
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 7/41 (17%)
Query: 15 LAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM 55
L +++ R ++IS NIANA DTP Y+ + + F M
Sbjct: 16 LGIRAQRAEVISSNIANA----DTPH---YKARDVDFSAAM 49
>gnl|CDD|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated.
Length = 402
Score = 31.3 bits (71), Expect = 0.075
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS--GGVRVK 64
S +IA SGL + ++ IS NIAN+ T G ++ F + +G GGV V
Sbjct: 2 SFNIALSGLNATTQQLNTISNNIANSSTKG-------FKGSRTEFSSIYNGGQPGGVEVS 54
Query: 65 KI 66
+
Sbjct: 55 SV 56
>gnl|CDD|183632 PRK12626, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 162
Score = 31.1 bits (70), Expect = 0.092
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS 58
+D L A L V++ R +++S NIANA DTPG YR + + F + +
Sbjct: 2 LDKLDAEFAFGRQALDVRAYRQELLSSNIANA----DTPG---YRARDVDFASTLARA 52
>gnl|CDD|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 241
Score = 30.8 bits (70), Expect = 0.12
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 10/54 (18%)
Query: 14 GLAVQSA---RMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVK 64
L+ Q A R+ I++N+AN T G +R + F+ V+ + +V
Sbjct: 8 ALSSQMALEKRLDTIADNVANVNTVG-------FRATEVKFDTVVSDTASKKVA 54
>gnl|CDD|183685 PRK12690, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 238
Score = 30.8 bits (70), Expect = 0.12
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 15 LAVQSA---RMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60
L QS MQ+++ NIANA TTG +RR+ + F E +
Sbjct: 9 LTRQSGLMREMQVVANNIANASTTG-------FRREGLVFSEYVKSLDS 50
Score = 27.7 bits (62), Expect = 1.0
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 82 PVANAS---GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134
P A G ++ NVN + E A M E R Y + + + + TT+ L
Sbjct: 183 PAEGARLLQGFLEGSNVNPVSEIARMIEVQRAYELGQSFLDREDERIRTTIRTLGQ 238
>gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 507
Score = 30.4 bits (69), Expect = 0.15
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 10 IANSGLAVQSARMQIISENIANARTTGDT 38
A GL Q A + + NIANA T G T
Sbjct: 10 TARRGLFAQQAALYVTGHNIANANTPGYT 38
>gnl|CDD|171613 PRK12621, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 136
Score = 30.1 bits (68), Expect = 0.19
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 15/120 (12%)
Query: 18 QSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGV--RVKKIGVDQSTFVE 75
Q R ++ N+AN T G Y+ + + FE+ + + G+ + K +++
Sbjct: 19 QLQRQNVVMSNLANVNTPG-------YKPRELEFEKELQAALGLDAKGKMTRTEKNHLPA 71
Query: 76 EFDPGHPVANASGIVK------YPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTL 129
FDP S K V++ E A M + Y A IK++ + + T +
Sbjct: 72 VFDPEGFEPEWSKAFKPRVVHGEDRVDLDKEMAKMAKNTLQYNALATVIKKNFEGLKTII 131
>gnl|CDD|183629 PRK12622, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 135
Score = 29.1 bits (65), Expect = 0.37
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFE 52
M+ S +++ L V S R +I++NIAN DTP ++R ++FE
Sbjct: 1 MNIFERSVDLSHRYLDVLSLRQSVIADNIANV----DTPN---FKRSKVTFE 45
>gnl|CDD|180205 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 29.0 bits (65), Expect = 0.43
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 78 DPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANL 115
DPG P I++ VLV +A RE R + L
Sbjct: 3801 DPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDEL 3838
>gnl|CDD|183766 PRK12816, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 264
Score = 29.0 bits (65), Expect = 0.43
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 79 PGHPVANA-----SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133
PG P + G ++ NV+++ E M R Y N + I+ S +M+ T +L R
Sbjct: 205 PGIPGSEGFGRVLQGFLEMSNVSIVEEMVTMIVAQRAYEINSKAIQTSDNMLGTANNLKR 264
Score = 25.2 bits (55), Expect = 5.9
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 11 ANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMH 56
A SG+ Q + I+ N+AN TTG +++ FE++++
Sbjct: 8 AASGMNAQQFNIDTIANNLANVNTTG-------FKKIRAEFEDLIY 46
>gnl|CDD|180697 PRK06797, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 135
Score = 28.8 bits (64), Expect = 0.50
Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 22/118 (18%)
Query: 8 AHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVK--- 64
+ + + + + R +S NIANA T G Y+ + ++F E M+ S +
Sbjct: 6 SDVGHYMNYLVTKR-NTVSSNIANANTPG-------YKAQDVTFAEQMNKSSALYKSNAA 57
Query: 65 --KIGVDQSTFVEEFDPGHPVANASGIVKYP---------NVNVLVETADMRETNRLY 111
K D E P N ++ +V+V E D+ + N+LY
Sbjct: 58 DLKSNPDLYQTNEMHLPTVNTKNTYAKIQTKSMQTNKDGNSVDVTTEMLDLMKANQLY 115
>gnl|CDD|139158 PRK12692, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 262
Score = 28.7 bits (64), Expect = 0.57
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
IA +G++ Q +++I+ NIAN TTG
Sbjct: 6 IAATGMSAQQLNLEVIANNIANLNTTG 32
>gnl|CDD|168340 PRK06003, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 126
Score = 28.4 bits (64), Expect = 0.59
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
Query: 19 SARMQIISENIANARTTGDTPGSDPYRRKTIS-FEEVMHGSG 59
S R ++ NIANA +TPG YR + + F +V+ +G
Sbjct: 18 SVRQATVAGNIANA----NTPG---YRARDVQPFADVLDKTG 52
>gnl|CDD|183633 PRK12627, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 128
Score = 28.2 bits (63), Expect = 0.63
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 13 SGLAVQSA-RMQIISENIANARTTGDTPGSDPYR-RKTISFEEVM--HGSGGVR 62
S +A + R +++ N+ANA DTPG YR R F E G+ G+R
Sbjct: 12 SAMARHAGERQAVVARNVANA----DTPG---YRARDLADFAESYRAEGTTGMR 58
>gnl|CDD|168176 PRK05683, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 676
Score = 27.8 bits (62), Expect = 1.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
I SGL + + NIAN T G
Sbjct: 6 IGLSGLGASQTALAVTGNNIANVDTAG 32
>gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 246
Score = 27.1 bits (61), Expect = 1.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 1 MDYLIASAHIANSGLAVQSA-RMQIISENIANARTTG 36
MD + + A SG A Q+ + +++ N+ANA T G
Sbjct: 1 MDRAL---YTAMSG-ASQNLNQQAVVANNLANASTPG 33
>gnl|CDD|177423 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional.
Length = 576
Score = 27.0 bits (60), Expect = 1.6
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 37 DTPGSDPYRRK--TISFEEVMHGSGGVRVKKI 66
DTPG + YRR T ++EE+ G RV KI
Sbjct: 406 DTPGHERYRRVHPTGTYEEIR--PDGTRVVKI 435
>gnl|CDD|183641 PRK12637, flgE, flagellar hook protein FlgE; Provisional.
Length = 473
Score = 27.0 bits (59), Expect = 1.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
NV++ E +M R Y AN QTIK ++M +++
Sbjct: 435 NVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNM 472
Score = 24.3 bits (52), Expect = 9.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 13 SGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSG-GVRVKKIGVDQ 70
SGL S + +I NIAN+ T G ++ SF +V S G+ VK ++Q
Sbjct: 8 SGLNAASQNLDVIGNNIANSGTVG-------FKSGAASFADVYASSRVGLGVKVSAINQ 59
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 26.6 bits (59), Expect = 1.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 56 HGSGGVRVKKIGVDQSTFVEEFDPGHPVANASGIV 90
HG GG + IGV + + F P HPV GI
Sbjct: 735 HGGGGPGMGPIGVKKH--LAPFLPSHPVVPTGGIP 767
>gnl|CDD|180346 PRK06004, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 127
Score = 26.2 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Query: 19 SARMQIISENIANARTTGDTPGSDP 43
R ++++EN+ANA DTPG P
Sbjct: 10 QERQKVLAENVANA----DTPGFRP 30
>gnl|CDD|183684 PRK12689, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 253
Score = 25.9 bits (57), Expect = 3.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 88 GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLRD 134
G ++ NVN ++E M E NR Y ++Q D+ T ++ L D
Sbjct: 204 GYIERSNVNPVLEMTRMMEVNRTYTQVSSMLQQQSDLRKTAIERLAD 250
>gnl|CDD|181252 PRK08147, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 547
Score = 25.8 bits (57), Expect = 3.6
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 10 IANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVD 69
A SGL A + +S NI+N G Y R+T + GV
Sbjct: 7 TAMSGLNAAQAALNTVSNNISNYNVAG-------YTRQTTILAQAGSTLTAGGWIGNGVY 59
Query: 70 QSTFVEEFD 78
S E+D
Sbjct: 60 VSGVQREYD 68
>gnl|CDD|140327 PTZ00306, PTZ00306, NADH-dependent fumarate reductase; Provisional.
Length = 1167
Score = 25.9 bits (57), Expect = 3.6
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 35 TGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVANA 86
TG DP R E + GSGGV + K G FV E D V+ A
Sbjct: 673 TGLIDPKDPSNRTKYLGPEALRGSGGVLLNKNG---ERFVNELDLRSVVSQA 721
>gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 651
Score = 25.7 bits (57), Expect = 3.9
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 10 IANSGLAVQSARMQIISENIANARTTG 36
I SGL + NI+NA T G
Sbjct: 7 IGLSGLNAAQWGLTTTGHNISNAATPG 33
>gnl|CDD|128470 smart00173, RAS, Ras subfamily of RAS small GTPases. Similar in
fold and function to the bacterial EF-Tu GTPase. p21Ras
couples receptor Tyr kinases and G protein receptors
to protein kinase cascades.
Length = 164
Score = 25.6 bits (57), Expect = 4.6
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 54 VMHGSGGVRVKKIGVD--QSTFVEEFDP 79
V+ GSGGV + + Q FV+++DP
Sbjct: 4 VVLGSGGVGKSALTIQFVQGHFVDDYDP 31
>gnl|CDD|177942 PLN02307, PLN02307, phosphoglucomutase.
Length = 579
Score = 25.0 bits (55), Expect = 6.6
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 13/50 (26%)
Query: 55 MHGSGGVRVKKI-----GVDQSTFV-----EEFDPGHPVAN---ASGIVK 91
MHG G K+I G +S+ + E+F GHP N A +VK
Sbjct: 232 MHGVTGAYAKRIFVEELGAPESSLLNCVPKEDFGGGHPDPNLTYAKELVK 281
>gnl|CDD|181572 PRK08871, flgK, flagellar hook-associated protein FlgK; Validated.
Length = 626
Score = 24.8 bits (54), Expect = 7.2
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 83 VANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
VA+ SG VN+ E A+M + + YMA+ + ++ ++D T L L
Sbjct: 583 VASISG------VNLDEEAANMMKFQQAYMASSRIMQAANDTFNTILQL 625
>gnl|CDD|150101 pfam09322, DUF1979, Domain of unknown function (DUF1979).
Members of this family of functionally uncharacterized
domains are found in various Oryza sativa mutator-like
transposases.
Length = 58
Score = 24.8 bits (54), Expect = 7.9
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 53 EVMHGSGGVRVKKIGVDQSTFV 74
+ HG G VR GVD S F+
Sbjct: 8 QFYHGEGNVRYGPTGVDLSDFI 29
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.315 0.130 0.359
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,112,660
Number of extensions: 121707
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 70
Length of query: 134
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,201,009
Effective search space: 214251459
Effective search space used: 214251459
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.7 bits)