RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod
protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
         (134 letters)



>1v33_A DNA primase small subunit; nucleotidyl transferase, riken
           structural genomics/proteomics initiative, RSGI,
           structural genomics; HET: DNA; 1.80A {Pyrococcus
           horikoshii} (A:1-179,A:304-344)
          Length = 220

 Score = 27.1 bits (60), Expect = 0.82
 Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 55  MHGSGGVRVKKIGVDQSTFVEEFDPGH 81
           +H   G+  K +G ++      F+P  
Sbjct: 193 LHSKVGLIAKYVGTNERDV-MRFNPFK 218


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (A:550-614)
          Length = 65

 Score = 24.3 bits (52), Expect = 5.9
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 94  NVNVLVE 100
           NV V +E
Sbjct: 1   NVEVKIE 7


>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein;
           NMR {Xenopus laevis} PDB: 2k46_A* (A:)
          Length = 174

 Score = 23.9 bits (51), Expect = 7.1
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 51  FEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNV 97
           F EV       +V  + V+  T V++ D    V +++   +   +++
Sbjct: 85  FAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISI 131


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase
           class II, ligase; 3.23A {Methanococcus maripaludis S2}
           (B:550-611)
          Length = 62

 Score = 23.9 bits (51), Expect = 7.2
 Identities = 4/7 (57%), Positives = 5/7 (71%)

Query: 94  NVNVLVE 100
           NV V +E
Sbjct: 1   NVEVKIE 7


>3gek_A Putative thioesterase YHDA; X-RAY, structure genomics, NESG,
           KR113, Q9CHK5_lacla, structural genomics, PSI-2; 2.24A
           {Lactococcus lactis subsp} (A:)
          Length = 146

 Score = 23.7 bits (51), Expect = 8.1
 Identities = 5/43 (11%), Positives = 9/43 (20%), Gaps = 2/43 (4%)

Query: 60  GVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETA 102
                   + + +        H  A   G +       L E  
Sbjct: 19  NSDKFVSKIYKFSSKXILSDFH--AQPQGFLNGGASLALAEIT 59


>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism,
           L-fucose to L-fuculose conversion; HET: FOC; 2.50A
           {Escherichia coli K12} (A:174-591)
          Length = 418

 Score = 23.9 bits (51), Expect = 8.2
 Identities = 5/62 (8%), Positives = 16/62 (25%)

Query: 67  GVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMT 126
             +    + E+  G   ++           +            L +A   +++   D+  
Sbjct: 257 ATEWCPAIHEYFRGGGYSSRFLTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHD 316

Query: 127 TT 128
             
Sbjct: 317 IL 318


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 957,440
Number of extensions: 38614
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 8
Length of query: 134
Length of database: 4,956,049
Length adjustment: 79
Effective length of query: 55
Effective length of database: 2,285,454
Effective search space: 125699970
Effective search space used: 125699970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)