RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter asiaticus str. psy62] (134 letters) >3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} Length = 402 Score = 47.7 bits (112), Expect = 1e-06 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 10/63 (15%) Query: 7 SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS---GGVRV 63 S A SGL + + +I NIAN+ T G ++ T SF ++ GS GV+V Sbjct: 1 SFSQAVSGLNAAATNLDVIGNNIANSATYG-------FKSGTASFADMFAGSKVGLGVKV 53 Query: 64 KKI 66 I Sbjct: 54 AGI 56 Score = 31.5 bits (70), Expect = 0.066 Identities = 13/38 (34%), Positives = 21/38 (55%) Query: 94 NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131 NV++ E +M R Y +N QTIK ++ T ++L Sbjct: 364 NVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 26.1 bits (57), Expect = 3.0 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 16/58 (27%) Query: 68 VDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRE-TN-RLYMANLQTIKQSHD 123 ++T + +F PG ASG+ VL T ++ T R+ +A T+ + D Sbjct: 495 QFKATHILDFGPG----GASGL------GVL--THRNKDGTGVRVIVAG--TLDINPD 538 >2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* Length = 174 Score = 25.9 bits (56), Expect = 3.2 Identities = 9/47 (19%), Positives = 21/47 (44%) Query: 51 FEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNV 97 F EV +V + V+ T V++ D V +++ + +++ Sbjct: 85 FAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISI 131 >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317 Score = 25.9 bits (56), Expect = 3.3 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 5/107 (4%) Query: 25 ISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVA 84 I+ ++ +T G+D Y + D + + + + Sbjct: 48 ITHSMVMFGSTSKVIGTDDYA----DISGSDVVIITASIPGRPKDDRSELLFGNARILDS 103 Query: 85 NASGIVKY-PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130 A G+ KY PN V+ T + + M LD Sbjct: 104 VAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGVLD 150 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 Score = 25.5 bits (54), Expect = 3.9 Identities = 6/39 (15%), Positives = 17/39 (43%) Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTP 39 ++ + H+ + +++ +N+ + TGD P Sbjct: 289 YPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 Score = 25.5 bits (54), Expect = 4.1 Identities = 7/39 (17%), Positives = 14/39 (35%) Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTP 39 D ++ + HI+ ++ I + N A G Sbjct: 268 RDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLV 306 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 Score = 24.6 bits (53), Expect = 7.1 Identities = 8/41 (19%), Positives = 16/41 (39%) Query: 1 MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGS 41 M ++ S HIA + +++ + T G+T Sbjct: 287 MPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTE 327 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.315 0.130 0.359 Gapped Lambda K H 0.267 0.0594 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,093,390 Number of extensions: 45732 Number of successful extensions: 103 Number of sequences better than 10.0: 1 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 11 Length of query: 134 Length of database: 5,693,230 Length adjustment: 82 Effective length of query: 52 Effective length of database: 3,705,222 Effective search space: 192671544 Effective search space used: 192671544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 51 (23.7 bits)