RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod
protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
         (134 letters)



>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor,
          universal joint, bacterial flagellum, motor protein;
          7.10A {Salmonella enterica subsp}
          Length = 402

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 7  SAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGS---GGVRV 63
          S   A SGL   +  + +I  NIAN+ T G       ++  T SF ++  GS    GV+V
Sbjct: 1  SFSQAVSGLNAAATNLDVIGNNIANSATYG-------FKSGTASFADMFAGSKVGLGVKV 53

Query: 64 KKI 66
            I
Sbjct: 54 AGI 56



 Score = 31.5 bits (70), Expect = 0.066
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 94  NVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDL 131
           NV++  E  +M    R Y +N QTIK    ++ T ++L
Sbjct: 364 NVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVNL 401


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.1 bits (57), Expect = 3.0
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 16/58 (27%)

Query: 68  VDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRE-TN-RLYMANLQTIKQSHD 123
             ++T + +F PG     ASG+       VL  T   ++ T  R+ +A   T+  + D
Sbjct: 495 QFKATHILDFGPG----GASGL------GVL--THRNKDGTGVRVIVAG--TLDINPD 538


>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR
           {Xenopus laevis} PDB: 2k46_A*
          Length = 174

 Score = 25.9 bits (56), Expect = 3.2
 Identities = 9/47 (19%), Positives = 21/47 (44%)

Query: 51  FEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNV 97
           F EV       +V  + V+  T V++ D    V +++   +   +++
Sbjct: 85  FAEVYFAQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISI 131


>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
           oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
           PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
          Length = 317

 Score = 25.9 bits (56), Expect = 3.3
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 25  ISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVA 84
           I+ ++    +T    G+D Y                  +     D  + +   +     +
Sbjct: 48  ITHSMVMFGSTSKVIGTDDYA----DISGSDVVIITASIPGRPKDDRSELLFGNARILDS 103

Query: 85  NASGIVKY-PNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLD 130
            A G+ KY PN  V+  T  +      +             M   LD
Sbjct: 104 VAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGVLD 150


>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
           variant of the BAB rossmann fold, oxidoreductase; 1.98A
           {Acidaminococcus fermentans}
          Length = 331

 Score = 25.5 bits (54), Expect = 3.9
 Identities = 6/39 (15%), Positives = 17/39 (43%)

Query: 1   MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTP 39
              ++ + H+ +         +++  +N+ +   TGD P
Sbjct: 289 YPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327


>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
           structure initiative; 2.20A {Lactobacillus plantarum}
          Length = 324

 Score = 25.5 bits (54), Expect = 4.1
 Identities = 7/39 (17%), Positives = 14/39 (35%)

Query: 1   MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTP 39
            D ++ + HI+      ++    I + N A     G   
Sbjct: 268 RDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLV 306


>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
           dehydrogenase, D-lactate dehydrogenase, oxidoreductase;
           HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
           c.23.12.1
          Length = 333

 Score = 24.6 bits (53), Expect = 7.1
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 1   MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGS 41
           M  ++ S HIA          +    +++ +  T G+T   
Sbjct: 287 MPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTE 327


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,093,390
Number of extensions: 45732
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 11
Length of query: 134
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 52
Effective length of database: 3,705,222
Effective search space: 192671544
Effective search space used: 192671544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)