RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod
protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
         (134 letters)



>d1s4bp_ d.92.1.5 (P:) Neurolysin (endopeptidase 24.16, thimet
           oligopeptidase) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 654

 Score = 25.1 bits (54), Expect = 2.0
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 71  STFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMT 126
            T+  EF  GH +       ++   +      D  E     + N    ++    M+
Sbjct: 446 ETYFHEF--GHVMHQLCSQAEFAMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMS 499


>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus),
           gamma chain [TaxId: 10090]}
          Length = 168

 Score = 24.6 bits (53), Expect = 3.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 17  VQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGGVRVKKIGVDQSTFVEE 76
           V + R    ++N   AR  G    S P   + +  ++V  G+G + +KKIG +  TF+ +
Sbjct: 99  VTAIRRVRKTDNNRIARACGARIVSRP---EELREDDVGTGAGLLEIKKIGDEYFTFITD 155


>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 24.0 bits (51), Expect = 4.2
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 16/57 (28%)

Query: 38 TPGSDPYRRKTISFEEV-MHGSGG---------------VRVKKIGVDQSTFVEEFD 78
          TPG  P R + +S+ +  + G+G                V +KK+  D+     E  
Sbjct: 9  TPGQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQ 65


>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima
           [TaxId: 2336]}
          Length = 172

 Score = 23.9 bits (52), Expect = 5.7
 Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 9/47 (19%)

Query: 74  VEEFDPGHPVANASGIV-----KYPNVNVLV-ETA---DMRETNRLY 111
           ++    G   +N   I+         V   V +     +M +  R+ 
Sbjct: 96  LKSGKNGEHASNLGAIIAHRFSSETGVPAYVVDPVVVDEMEDVARVS 142


>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
           (aminotransferase) {Synechococcus sp., strain GR6
           [TaxId: 1131]}
          Length = 427

 Score = 23.7 bits (50), Expect = 6.0
 Identities = 14/50 (28%), Positives = 19/50 (38%)

Query: 45  RRKTISFEEVMHGSGGVRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPN 94
           R K I FE   HG   + + K G   +T      PG P    +  +  P 
Sbjct: 134 RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY 183


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 468,104
Number of extensions: 19271
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 6
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.9 bits)