BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780380|ref|YP_003064793.1| flagellar basal body rod
protein FlgC [Candidatus Liberibacter asiaticus str. psy62]
         (134 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780380|ref|YP_003064793.1| flagellar basal body rod protein FlgC [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 134

 Score =  279 bits (713), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 134/134 (100%), Positives = 134/134 (100%)

Query: 1   MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60
           MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG
Sbjct: 1   MDYLIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVMHGSGG 60

Query: 61  VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120
           VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ
Sbjct: 61  VRVKKIGVDQSTFVEEFDPGHPVANASGIVKYPNVNVLVETADMRETNRLYMANLQTIKQ 120

Query: 121 SHDMMTTTLDLLRD 134
           SHDMMTTTLDLLRD
Sbjct: 121 SHDMMTTTLDLLRD 134


>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 421

 Score = 35.8 bits (81), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 19/124 (15%)

Query: 4   LIASAHIANSGLAVQSARMQIISENIANARTTGDTPGSDPYRRKTISFEEVM-------H 56
           ++ S   A SG+  QS R+  +S+NIAN  T G       Y+R  I+F  ++       +
Sbjct: 3   ILGSMKTAMSGMDAQSNRVSAVSDNIANVDTVG-------YKRTAIAFSSLVFPSTSNSY 55

Query: 57  GSGGVRV--KKIGVDQSTFVEEFDPGHPVANASG--IVK-YPNVNVLVETADMRETNRLY 111
            SGG+ +  K +  +Q + +             G  IVK   NVN L    D    N  +
Sbjct: 56  VSGGLEISTKDMISEQGSLMHTASNTDLAIQGKGFFIVKGRDNVNCLTRAGDFHINNEGF 115

Query: 112 MANL 115
           + N+
Sbjct: 116 LENV 119



 Score = 26.6 bits (57), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 79  PGHPVANA--SGIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDMMTTTLDLLR 133
           PGH       SG ++  NV++  E  ++ E  R Y  N +  +   D M   + L R
Sbjct: 365 PGHNQHGEIFSGALETANVDIASELTELIEAQRNYAVNSKVFQTGSDFMDILISLKR 421


>gi|254780381|ref|YP_003064794.1| flagellar basal body rod protein FlgB [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 130

 Score = 28.5 bits (62), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 8/38 (21%)

Query: 19 SARMQIISENIANARTTGDTPGSDPYRRKTI-SFEEVM 55
          S R +I+SENIANA     TP    YR K I SFE ++
Sbjct: 18 SERQKIVSENIANA----STPN---YRAKDISSFETIL 48


>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 220

 Score = 23.5 bits (49), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 64  KKIGVDQSTFVEEFDPGHPVANASGIVKY-PNVN 96
           K++G+   +FVE +     V ++ G VK+ P +N
Sbjct: 183 KRLGLSFKSFVERWFHTQQVGSSIGAVKHIPKIN 216


>gi|254780378|ref|YP_003064791.1| flagellar basal body rod protein FlgG [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 262

 Score = 22.3 bits (46), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 88  GIVKYPNVNVLVETADMRETNRLYMANLQTIKQSHDM 124
           G ++  NV+ + E ++M    R Y  N + I+ + +M
Sbjct: 218 GYLEASNVDAVKEISEMISAQRAYEMNSKVIEAADEM 254


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.315    0.130    0.359 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,969
Number of Sequences: 1233
Number of extensions: 2703
Number of successful extensions: 11
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 10
length of query: 134
length of database: 328,796
effective HSP length: 65
effective length of query: 69
effective length of database: 248,651
effective search space: 17156919
effective search space used: 17156919
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)