HHsearch alignment for GI: 254780381 and conserved domain: PRK05680
>PRK05680 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=100.00 E-value=1.9e-35 Score=207.99 Aligned_cols=123 Identities=26% Similarity=0.398 Sum_probs=103.2
Q ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH---------HCCCCCCCCCCCCCCCCC
Q ss_conf 601-4899999999999999999996310013777653322105676654432---------113466511345666555
Q gi|254780381|r 2 QPI-TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL---------MARTHETHLKESDSSGLH 71 (130)
Q Consensus 2 ~~~-~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~---------~~~~~~~~~~~~~~~~~~ 71 (130)
T Consensus 3 ~~~~~~~~~l~~aLd~~~~Rq~via~NIANadTPgYKa~dv-~Fe~~L~~a~~~~~~~~~~~l~~T~~~Hi~~~~~~~-- 79 (137)
T PRK05680 3 DSFDKALGFQQEALNLRAQRQEVIANNIANADTPGYKARDI-DFESVLAKAMSGRQSGGGLALARTSERHIPAQATTS-- 79 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--
T ss_conf 48999999999999999999999986020268999886627-799999999842566677654557833247777888--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 55576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 72 WNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 80 ---~~~~~~~~~~~~~~~DGN~Vdle~Em~~~a~N~l~Y~a~~~~l~~~~~~l~~aI~g 135 (137)
T PRK05680 80 ---SKAELLYRDPHQPSNDGNTVDMDVERTEFAKNSLMYQALLTALNGKFKGLMSVLQG 135 (137)
T ss_pred ---CCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---87632442798647899860879999999999999999999999999999999865