HHsearch alignment for GI: 254780381 and conserved domain: PRK05681
>PRK05681 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=99.94 E-value=1.3e-26 Score=160.97 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------6533221056766544-3211346651134566655555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQN-FLMARTHETHLKESDSSGLHWN 73 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (130)
T Consensus 1 M~~~~~~~ia~sgl~aq~~rl~~~a~NiAN~~tt~t~~g~pYr~k~vv-f~~~~~~~~~~~~~~~gV~v~~i~~d~~~~~ 79 (139)
T PRK05681 1 MSLFSSFNIAGSGLSAQSQRLNVISSNIANADSTAGPDGDPYRRKQVV-FAAFGSAELDRGQGTGGVKVAKIVEDQSPFK 79 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEE-EEECCCCCCCCCCCCCCEEEEEEECCCCCHH
T ss_conf 953888999999999999999999985532677789999876431245-5303310002467877658877743897422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 74 AHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 74 ~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 80 ~~YdP~hP~AD~~GyV~~pNVd~~~Emvdm~~A~R~YeAN~~~~~~~k~m~~~~L~ 135 (139)
T PRK05681 80 LVYDPGHPAADAKGYVKYPNVNVVVEMVDMISASRSYEANVEVLNAAKSMMQKTLT 135 (139)
T ss_pred HHCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30478998888667154289888999999999999999999999999999999998