HHsearch alignment for GI: 254780381 and conserved domain: PRK06802
>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=99.95 E-value=6.4e-28 Score=167.91 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHCCC--CC--CCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------6533221056766544321134--66--51134566655
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNFLMART--HE--THLKESDSSGL 70 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~~~~~~--~~--~~~~~~~~~~~ 70 (130)
T Consensus 1 Ms~~~~~~Ia~Sgl~Aqr~Rm~~ia~NiANa~tt~~~~g~~y~~k~~v-f~~~~~~~~~~~~~~~~~~~V~v~~i~~~~~ 79 (141)
T PRK06802 1 MSFNQIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATVYKARSPV-FSAVYSARTAADPRGVQSAQVQVLDVVEVGG 79 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
T ss_conf 960778889999999999999999998872688898999866343332-4565534431135577886258875435897
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 55557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 71 HWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 80 ~-~~~YdP~hP~Ad~~GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~ 137 (141)
T PRK06802 80 S-VQRYEPNNPLANPQGYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLK 137 (141)
T ss_pred C-HHHCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3-311599999989898884689898999999999999999999999999999999998