HHsearch alignment for GI: 254780381 and conserved domain: PRK06802

>PRK06802 flgC flagellar basal body rod protein FlgC; Reviewed.
Probab=99.95  E-value=6.4e-28  Score=167.91  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=102.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHCCC--CC--CCCCCCCCCCC
Q ss_conf             96014899999999999999999996310013777------6533221056766544321134--66--51134566655
Q gi|254780381|r    1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNFLMART--HE--THLKESDSSGL   70 (130)
Q Consensus         1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~~~~~~--~~--~~~~~~~~~~~   70 (130)
T Consensus         1 Ms~~~~~~Ia~Sgl~Aqr~Rm~~ia~NiANa~tt~~~~g~~y~~k~~v-f~~~~~~~~~~~~~~~~~~~V~v~~i~~~~~   79 (141)
T PRK06802          1 MSFNQIYRIAGSAMTAQTIRLNTVASNLANAESPAASAATVYKARSPV-FSAVYSARTAADPRGVQSAQVQVLDVVEVGG   79 (141)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHCCCCCCCCCCEEEEEEECCCC
T ss_conf             960778889999999999999999998872688898999866343332-4565534431135577886258875435897


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             55557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r   71 HWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus        80 ~-~~~YdP~hP~Ad~~GyV~~PnVn~~~EMvdm~~AsRsYeANv~~~~~aK~m~~~aL~  137 (141)
T PRK06802         80 S-VQRYEPNNPLANPQGYVFYPDVNVVSEMADMMSASRSFETNVEVLNSVKSMQQSLLK  137 (141)
T ss_pred             C-HHHCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3-311599999989898884689898999999999999999999999999999999998