HHsearch alignment for GI: 254780381 and conserved domain: PRK12621
>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00 E-value=5.3e-34 Score=200.31 Aligned_cols=121 Identities=23% Similarity=0.272 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH------HCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4899999999999999999996310013777653322105676654432------1134665113456665555557677
Q gi|254780381|r 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL------MARTHETHLKESDSSGLHWNAHVIE 78 (130)
Q Consensus 5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (130)
T Consensus 7 ~~i~ll~~aLd~~~~Rq~via~NIANadTPgYKardv-~Fe~~L~~a~~~~~~~~l~~T~~~Hi~~~~~~~~~~~~~~-- 83 (136)
T PRK12621 7 PHVNLVGKVMDMQLQRQNVVMSNIANVRTPGYKPREL-EFEKQLQSALGLDAKGRMTRTEENHLPAVFDPEGFGPEWS-- 83 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--
T ss_conf 7999999999999999999997132058999874418-7899999987614478645577131578889776775401--
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7765887764476520089999999999999999999999999999996369
Q gi|254780381|r 79 APLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 79 ~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 84 --~~~~~~~~~dgN~Vdid~Em~~la~N~l~Y~a~~~~l~~~~~~l~~aI~~ 133 (136)
T PRK12621 84 --KAFKPRVVHGEDRVNLDKEMAKMAKNSLQYNALTTVIKGNFEGVKNIIME 133 (136)
T ss_pred --ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf --04787646899876548999999999999999999999999999999983