HHsearch alignment for GI: 254780381 and conserved domain: PRK12621

>PRK12621 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00  E-value=5.3e-34  Score=200.31  Aligned_cols=121  Identities=23%  Similarity=0.272  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH------HCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             4899999999999999999996310013777653322105676654432------1134665113456665555557677
Q gi|254780381|r    5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL------MARTHETHLKESDSSGLHWNAHVIE   78 (130)
Q Consensus         5 ~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~   78 (130)
T Consensus         7 ~~i~ll~~aLd~~~~Rq~via~NIANadTPgYKardv-~Fe~~L~~a~~~~~~~~l~~T~~~Hi~~~~~~~~~~~~~~--   83 (136)
T PRK12621          7 PHVNLVGKVMDMQLQRQNVVMSNIANVRTPGYKPREL-EFEKQLQSALGLDAKGRMTRTEENHLPAVFDPEGFGPEWS--   83 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--
T ss_conf             7999999999999999999997132058999874418-7899999987614478645577131578889776775401--


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             7765887764476520089999999999999999999999999999996369
Q gi|254780381|r   79 APLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG  130 (130)
Q Consensus        79 ~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G  130 (130)
T Consensus        84 --~~~~~~~~~dgN~Vdid~Em~~la~N~l~Y~a~~~~l~~~~~~l~~aI~~  133 (136)
T PRK12621         84 --KAFKPRVVHGEDRVNLDKEMAKMAKNSLQYNALTTVIKGNFEGVKNIIME  133 (136)
T ss_pred             --ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             --04787646899876548999999999999999999999999999999983