HHsearch alignment for GI: 254780381 and conserved domain: PRK12625
>PRK12625 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00 E-value=2.9e-33 Score=196.37 Aligned_cols=121 Identities=23% Similarity=0.305 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH------HHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01489999999999999999999631001377765332210567665443------211346651134566655555576
Q gi|254780381|r 3 PITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF------LMARTHETHLKESDSSGLHWNAHV 76 (130)
Q Consensus 3 ~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (130)
T Consensus 5 fd~~~~~~~~aL~~~~~Rq~via~NIANadTPgYKa~dl-~Fe~~L~~a~~~~~~~~l~~T~~~H~~~~~~~~~~~---~ 80 (132)
T PRK12625 5 FDKALGVHQYTLGIRAQRAEVISSNIANADTPHYKARDV-DFSAAMQAARSQQQGLEMTGSDEKHFDLAALTGQHV---K 80 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC---E
T ss_conf 888861789999999999999987143068999886538-899999998754788866547745467767787654---0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 77 IEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 77 ~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 81 ~~~---~~~~~~~DGN~Vdid~Em~~~aeN~l~Y~a~~~~l~~k~~~l~~aI~G 131 (132)
T PRK12625 81 FRV---PNQPDTGDGNTVDIQQEQSAFMQNALEYQMSLGFLDSKFSGMKKALRG 131 (132)
T ss_pred EEC---CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 235---787747899811479999999999999999999999999999998758