HHsearch alignment for GI: 254780381 and conserved domain: PRK12626
>PRK12626 flgB flagellar basal body rod protein FlgB; Provisional.
Probab=100.00 E-value=7.6e-35 Score=204.80 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=102.1
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH--------------------------
Q ss_conf 9601-4899999999999999999996310013777653322105676654432--------------------------
Q gi|254780381|r 1 MQPI-TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFL-------------------------- 53 (130)
Q Consensus 1 m~~~-~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~-------------------------- 53 (130)
T Consensus 2 ~~~ld~~~~~~~~AL~lR~~RqevlAsNIANadTPgYKArDl-dFe~~L~~al~~~~~~~~~~~~~~l~~~~~~~~~~~~ 80 (162)
T PRK12626 2 LDKLDAEFAFGRQALDVRAYRQELLSSNIANADTPGYRARDV-DFASTLARALKQTDGGAAAGNAAQLPMAQPAGVTSGM 80 (162)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 347787736109999999999999985001378999864358-7999999998621355555531001211223444554
Q ss_pred -HCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf -11346651134566--655555576777765887764476520089999999999999999999999999999996369
Q gi|254780381|r 54 -MARTHETHLKESDS--SGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 54 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 81 ~l~~T~~~Hl~~~~~~~~~~~~~~~~~~~~yR~p~q~s~DGNtVDld~E~a~faeN~l~YqAsl~fl~~ki~~l~~AI~~ 160 (162)
T PRK12626 81 SMVSTAPGHMAGTVKLIPTGGPSDDYGRAQYRMPLQPALDGNTVDLDTERVQFADNALHYETGMTVMTQQIKTMIAAITS 160 (162)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 31335742125643346566764444540111688868899750469999999999999999999999899999999756