HHsearch alignment for GI: 254780381 and conserved domain: PRK12628
>PRK12628 flgC flagellar basal body rod protein FlgC; Provisional.
Probab=99.96 E-value=2.8e-28 Score=169.79 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=108.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC------CCCCCCCCHHHHHHHHHHHCC---CCCCCCCCCCCCCCC
Q ss_conf 96014899999999999999999996310013777------653322105676654432113---466511345666555
Q gi|254780381|r 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQNFLMAR---THETHLKESDSSGLH 71 (130)
Q Consensus 1 m~~~~~f~~~~~~l~~~~~R~~via~NIANadTPg------Yk~~dv~~F~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 71 (130)
T Consensus 1 M~l~~~~~Ia~sgm~Aqr~Rl~viasNiANa~t~~~~~~~~Y~~k~~v-f~~~~~~~~~~~~~~~~~gV~v~~I~~~~~~ 79 (140)
T PRK12628 1 MSLNAIFDIAASAMTAETVRLTTSAGNMSNANVEAGSPDEVYQAKYPV-FKSVQENANQWMGEQIKAGVKLDGIYESDAE 79 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCH-HHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
T ss_conf 960778889999999999999999998863688888999733531301-3446665543115556787489866637998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 5557677776588776447652008999999999999999999999999999999636
Q gi|254780381|r 72 WNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
T Consensus 80 ~~~~YdP~hP~Ad~~GyV~~pnVn~~~EMvdm~~AsRsYEANv~v~~~aK~M~~~aL~ 137 (140)
T PRK12628 80 PHRRYDPNSPIADKDGFVYTSNINYVEEMANIISASRSYQMNIELLNTTKQLMQRTLQ 137 (140)
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2203699999988898673489888999999999999999999999999999999986