HHsearch alignment for GI: 254780381 and conserved domain: PRK12685
>PRK12685 flgB flagellar basal body rod protein FlgB; Reviewed.
Probab=100.00 E-value=1e-32 Score=193.53 Aligned_cols=111 Identities=22% Similarity=0.302 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01489999999999999999999631001377765332210567665443211346651134566655555576777765
Q gi|254780381|r 3 PITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNAHVIEAPLD 82 (130)
Q Consensus 3 ~~~~f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (130)
T Consensus 5 ~d~~~~~~~~aLd~~~~Rq~via~NIANadTPgYKakdl-~F~~~l~~~~~~~~--~~--------------~~~~~~~~ 67 (116)
T PRK12685 5 LDAALGVHPQTLDFRVERSKVLASNLANAETPGYKARDL-DFKAVMSQINAGMQ--PK--------------QQYELSYR 67 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHHCCCC--CC--------------CCCCCCCC
T ss_conf 898865789999999999999986033168999876658-89999999856899--88--------------78775416
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 887764476520089999999999999999999999999999996369
Q gi|254780381|r 83 QTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 (130)
Q Consensus 83 ~~~~~~~dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~G 130 (130)
T Consensus 68 ~~~~~~~DGN~Vdld~Em~~~aeN~l~Y~a~~~~l~~~~~~lk~AI~G 115 (116)
T PRK12685 68 VPYQNSADGNTVELGKEQARYSQNAMDYQTSLTFLNMKISGLKSAIEG 115 (116)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 898869999853789999999999999999999999999999998668