HHsearch alignment for GI: 254780381 and conserved domain: TIGR02488
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG; InterPro: IPR012834 This family consists of the FlgG protein of the flagellar apparatus in the proteobacteria and spirochetes. The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod . The rod consists of about 26 subunits of flgG in the distal portion, and flgB, flgC and flgF are thought to build up the proximal portion of the rod with about 6 subunits each.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0009426 flagellin-based flagellum basal body distal rod.
Probab=99.80 E-value=2.7e-19 Score=121.94 Aligned_cols=45 Identities=24% Similarity=0.379 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999999999999999999631001377765332210567665443
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNF 52 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~ 52 (130)
T Consensus 2 L~tAaTGM~AQQtn~~VIsNNLANVnT~GFKk~RA-~FEDL~YQ~~ 46 (263)
T TIGR02488 2 LWTAATGMNAQQTNMDVISNNLANVNTTGFKKDRA-EFEDLLYQTV 46 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHHH
T ss_conf 30336558887357888776331102344121236-7655747731