HHsearch alignment for GI: 254780381 and conserved domain: TIGR02489
>TIGR02489 flgE_epsilon flagellar hook protein FlgE; InterPro: IPR012835 Members of this family are flagellar hook proteins, designated FlgE, as found in the epsilon subdivision of the proteobacteria (Helicobacter, Wolinella, and Campylobacter). These proteins differ significantly in architecture from proteins designated FlgE in other lineages; the N-terminal and C-terminal domains are homologous, but members of this family only contain a large central domain that is surface-exposed and variable between strains.; GO: 0006928 cell motility, 0043064 flagellum organization and biogenesis, 0044461 flagellin-based flagellum part.
Probab=96.88 E-value=0.00015 Score=43.43 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 765200899999999999999999999999999999963
Q gi|254780381|r 90 SGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 90 dgn~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
T Consensus 835 EMSNVDLSRsLT~LIvvQRGfQANSKtvtTSDQiL~TLl 873 (877)
T TIGR02489 835 EMSNVDLSRSLTQLIVVQRGFQANSKTVTTSDQILNTLL 873 (877)
T ss_pred CCCCHHHHHHHHHEEEEECCEECCCCCCCHHHHHHHHHH
T ss_conf 001004666430127765141145640301578999997