HHsearch alignment for GI: 254780381 and conserved domain: TIGR03506
>TIGR03506 FlgEFG_subfam fagellar hook-basal body proteins. This model encompasses three closely related flagellar proteins usually denoted FlgE, FlgF and FlgG. The names have often been mis-assigned, however. Three equivalog HMMs, TIGR02489, TIGR02490 and TIGR00488, respectively, separate the individual forms into three genome-context consistent groups. The major differences between these genes are architectural, with variable central sections between relatively conserved N- and C-terminal domains. More distantly related are two other flagellar apparatus familis, FlgC (TIGR01395) which consists of little else but the N-and C-terminal domains and FlgK (TIGR02492) with a substantial but different central domain.
Probab=99.36 E-value=2e-12 Score=85.34 Aligned_cols=43 Identities=30% Similarity=0.406 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999999999999999996310013777653322105676654
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQ 50 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~ 50 (130)
T Consensus 3 ly~a~sgm~a~~~~l~visnNlAN~nT~GfK~~~~-~F~~~~~~ 45 (231)
T TIGR03506 3 LYTALSGLNAQSKALDVIANNIANANTTGFKASRA-EFSDLLAQ 45 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC-CHHHHHHC
T ss_conf 89999999999986788888888777644354724-17887523