HHsearch alignment for GI: 254780381 and conserved domain: pfam06429

>pfam06429 DUF1078 Domain of unknown function (DUF1078). This family consists of a number of C-terminal domains of unknown function. This domain seems to be specific to flagellar basal-body rod and flagellar hook proteins in which pfam00460 is often present at the extreme N terminus.
Probab=97.96  E-value=1.7e-05  Score=48.46  Aligned_cols=38  Identities=21%  Similarity=0.342  Sum_probs=36.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             52008999999999999999999999999999999636
Q gi|254780381|r   92 NTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR  129 (130)
Q Consensus        92 n~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~  129 (130)
T Consensus         1 SnV~~~~Em~~mi~~qr~yqa~~k~i~~~~em~~~~~~   38 (39)
T pfam06429         1 SNVDLVEEMVNLIEAQRAYEANAKVIQTADEMLGTLLN   38 (39)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             98878999999999999989999999889999999876