Query gi|254780381|ref|YP_003064794.1| flagellar basal body rod protein FlgB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 130
No_of_seqs 119 out of 1340
Neff 7.9
Searched_HMMs 23785
Date Mon May 30 09:48:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780381.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a69_A Flagellar HOOK protein 99.1 2.8E-11 1.2E-15 78.1 3.5 38 92-129 363-400 (402)
2 3a69_A Flagellar HOOK protein 98.2 1.8E-06 7.7E-11 52.4 5.1 54 7-61 2-55 (402)
3 1ucu_A Phase 1 flagellin; flag 90.4 0.44 1.8E-05 23.8 5.2 37 93-129 455-491 (494)
4 1ory_B Flagellin; flagellar ch 71.6 1.2 5E-05 21.5 1.3 36 93-128 16-51 (55)
5 2q6f_A Fragment, infectious br 35.6 7.4 0.00031 17.2 0.4 17 27-43 92-108 (309)
6 2zu2_A 3C-like proteinase; pro 35.1 7.7 0.00032 17.2 0.4 17 27-43 91-107 (302)
7 2h2z_A PP1AB, ORF1AB, replicas 32.6 7.8 0.00033 17.1 0.0 17 27-43 92-108 (306)
8 1lvo_A Replicase, hydrolase do 31.3 11 0.00045 16.4 0.6 17 27-43 91-107 (302)
9 3d23_B 3C-like proteinase; mai 30.8 10 0.00042 16.6 0.4 17 27-43 94-110 (302)
10 1u0l_A Probable GTPase ENGC; p 11.3 62 0.0026 12.3 0.9 17 31-47 226-242 (301)
No 1
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=99.11 E-value=2.8e-11 Score=78.09 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 52008999999999999999999999999999999636
Q gi|254780381|r 92 NTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 92 n~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
.+|||++||++|+.-|+.|+|+.++|....+||.++|.
T Consensus 363 S~V~ldeEmtnli~~Q~aY~A~akvitt~demld~lin 400 (402)
T 3a69_A 363 SNVDLSKELVNMIVAQRNYQSNAQTIKTQDQILNTLVN 400 (402)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14799999999999999999975266499999999970
No 2
>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp}
Probab=98.17 E-value=1.8e-06 Score=52.45 Aligned_cols=54 Identities=19% Similarity=0.236 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999999999999631001377765332210567665443211346651
Q gi|254780381|r 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETH 61 (130)
Q Consensus 7 f~~~~~~l~~~~~R~~via~NIANadTPgYk~~dv~~F~~~l~~~~~~~~~~~~~ 61 (130)
|.++-++|.+++..++|+++||||++||||||+++ .|++.+....-+.++....
T Consensus 2 ~~~a~sGl~A~q~al~vts~NIANaNT~GYsRq~v-~f~~~~~~~~~G~GV~v~~ 55 (402)
T 3a69_A 2 FSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTA-SFADMFAGSKVGLGVKVAG 55 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCC-CHHHHHCCCCCCCCEEEEE
T ss_conf 78999999999973578888898777642065702-0777646687767447767
No 3
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=90.42 E-value=0.44 Score=23.80 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2008999999999999999999999999999999636
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al~ 129 (130)
..|+.+|++++.+.|+.+|+.++++....+.-+.+|+
T Consensus 455 DaD~a~e~~~l~~~qi~~Qaa~~~laqAn~~~q~vl~ 491 (494)
T 1ucu_A 455 DSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLS 491 (494)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 1409999999999999999999999997526789998
No 4
>1ory_B Flagellin; flagellar chaperone, cytosolic export chaperone, FLIS, FLIC; 2.45A {Aquifex aeolicus}
Probab=71.56 E-value=1.2 Score=21.49 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 200899999999999999999999999999999963
Q gi|254780381|r 93 TVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVV 128 (130)
Q Consensus 93 ~Vdl~~Em~~~~~~~~~Y~a~~~~~~~~~~~~~~al 128 (130)
.+|+..||+++.+.++..++...++......-+.+|
T Consensus 16 DaD~A~E~~~lak~qIL~qa~~amLaQAN~~~q~vL 51 (55)
T 1ory_B 16 NVDFAKEMTEFTKYQIRMQSGVAMLAQANALPQLVL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 155999999999999999999999999842678999
No 5
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=35.63 E-value=7.4 Score=17.24 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.0
Q ss_pred HHHCCCCCCCCCCCCCC
Q ss_conf 31001377765332210
Q gi|254780381|r 27 NIANASTPNYRAKDISS 43 (130)
Q Consensus 27 NIANadTPgYk~~dv~~ 43 (130)
+.+|.+||.|+-+.+.+
T Consensus 92 ~~~N~~TP~y~F~~~kp 108 (309)
T 2q6f_A 92 AVANAETPKYKFVKANC 108 (309)
T ss_dssp SSCCTTCCSEEECCCCT
T ss_pred ECCCCCCCCEEEEECCC
T ss_conf 32689998637896378
No 6
>2zu2_A 3C-like proteinase; protease-inhibitor complex, cytoplasm, hydrolase, membrane, metal-binding, protease, ribosomal frameshifting; 1.80A {Human coronavirus 229E} PDB: 1p9s_A
Probab=35.09 E-value=7.7 Score=17.16 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.8
Q ss_pred HHHCCCCCCCCCCCCCC
Q ss_conf 31001377765332210
Q gi|254780381|r 27 NIANASTPNYRAKDISS 43 (130)
Q Consensus 27 NIANadTPgYk~~dv~~ 43 (130)
+.+|++||.|+-+.+.+
T Consensus 91 ~~~N~~TPky~F~~~kp 107 (302)
T 2zu2_A 91 SQTNMHTPRHSFRTLKS 107 (302)
T ss_dssp SSCCTTCCSEEECCCCT
T ss_pred ECCCCCCCCEEEEECCC
T ss_conf 32588998637896478
No 7
>2h2z_A PP1AB, ORF1AB, replicase polyprotein 1AB; main protease, authentic N and C termini, viral protein; 1.60A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=32.57 E-value=7.8 Score=17.13 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=13.7
Q ss_pred HHHCCCCCCCCCCCCCC
Q ss_conf 31001377765332210
Q gi|254780381|r 27 NIANASTPNYRAKDISS 43 (130)
Q Consensus 27 NIANadTPgYk~~dv~~ 43 (130)
+.+|++||.|+-+.+.+
T Consensus 92 ~~~N~~TPky~F~~~kp 108 (306)
T 2h2z_A 92 DTSNPKTPKYKFVRIQP 108 (306)
T ss_dssp SSCCTTCCEEEECCCCT
T ss_pred ECCCCCCCCEEEEECCC
T ss_conf 32689998637896378
No 8
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} SCOP: b.47.1.4 PDB: 1p9u_A 2amp_A*
Probab=31.32 E-value=11 Score=16.42 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=13.8
Q ss_pred HHHCCCCCCCCCCCCCC
Q ss_conf 31001377765332210
Q gi|254780381|r 27 NIANASTPNYRAKDISS 43 (130)
Q Consensus 27 NIANadTPgYk~~dv~~ 43 (130)
+.+|.+||.|+-+.+.+
T Consensus 91 ~~~N~~TP~y~F~~~kp 107 (302)
T 1lvo_A 91 NQVNPNTPEHKFKSIKA 107 (302)
T ss_dssp SSCCTTCCCCEECCCCT
T ss_pred ECCCCCCCCEEEEECCC
T ss_conf 33689999647996378
No 9
>3d23_B 3C-like proteinase; main protease, ATP-binding, cytoplasm, endonuclease, exonuclease, helicase, hydrolase, membrane, metal-binding; HET: 3IH; 2.50A {Human coronavirus HKU1}
Probab=30.78 E-value=10 Score=16.56 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=13.7
Q ss_pred HHHCCCCCCCCCCCCCC
Q ss_conf 31001377765332210
Q gi|254780381|r 27 NIANASTPNYRAKDISS 43 (130)
Q Consensus 27 NIANadTPgYk~~dv~~ 43 (130)
+.+|++||.|+-+.+.+
T Consensus 94 ~~~N~~TPky~F~~~kp 110 (302)
T 3d23_B 94 SLQNPYTPKYTFGNVKP 110 (302)
T ss_dssp SSCCTTCCSEEECCCCT
T ss_pred ECCCCCCCCEEEEECCC
T ss_conf 32689998637896378
No 10
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=11.30 E-value=62 Score=12.34 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCHHHH
Q ss_conf 13777653322105676
Q gi|254780381|r 31 ASTPNYRAKDISSFETI 47 (130)
Q Consensus 31 adTPgYk~~dv~~F~~~ 47 (130)
+||||++.-++..++..
T Consensus 226 iDTPG~r~~~l~~~~~~ 242 (301)
T 1u0l_A 226 VDTPGFANLEINDIEPE 242 (301)
T ss_dssp ESSCSSTTCCCCSSCHH
T ss_pred EECCCCCCCCCCCCCHH
T ss_conf 96898665677779989
Done!