RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780381|ref|YP_003064794.1| flagellar basal body rod
protein FlgB [Candidatus Liberibacter asiaticus str. psy62]
         (130 letters)



>gnl|CDD|32000 COG1815, FlgB, Flagellar basal body protein [Cell motility and
           secretion].
          Length = 133

 Score = 90.0 bits (223), Expect = 2e-19
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 13/137 (9%)

Query: 1   MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETIL-------NQNFL 53
           M     F +  +  +  S RQ++++ NIANA TP Y+AKD+  FE++L       N    
Sbjct: 2   MSFDRAFGLLQKALDVRSLRQEVIANNIANADTPGYKAKDV-DFESVLKKALAGNNTTLA 60

Query: 54  MARTHETHLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELN 113
           +A+T   HL  +++           + LD+       GNTV +  E+ +    + +Y+  
Sbjct: 61  LAKTSTRHLGPAENIDPTDA-----SLLDRIGDQPNDGNTVDLDREMTEFAKNQLMYQAL 115

Query: 114 TKLIKKLNSMVMHVVRG 130
              +K    M+  V++G
Sbjct: 116 LSFLKSQIKMLNSVLKG 132


>gnl|CDD|34398 COG4787, FlgF, Flagellar basal body rod protein [Cell motility
          and secretion].
          Length = 251

 Score = 31.5 bits (71), Expect = 0.066
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 14 ANWLSERQKIVSENIANASTPNYRAKDISSFETILNQN 51
          A+ L E+Q + + N+ANAST  +RA  +++   +    
Sbjct: 12 ASQLLEQQAVTANNLANASTTGFRA-QLNAARAVQVHG 48


>gnl|CDD|34397 COG4786, FlgG, Flagellar basal body rod protein [Cell motility
          and secretion].
          Length = 265

 Score = 30.2 bits (68), Expect = 0.16
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 20 RQKIVSENIANASTPNYRAKDISSFETILNQNF 52
          +  ++S N+AN +T  ++ +D + FE +L Q  
Sbjct: 18 KLDVISNNLANVNTTGFK-RDRAEFEDLLYQTI 49


>gnl|CDD|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility
          and secretion].
          Length = 137

 Score = 29.5 bits (66), Expect = 0.26
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 1  MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQN 51
          M   + F IA    +  S R  ++S NIANA +        YR K +  F   L   
Sbjct: 1  MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQV-VFSAELFAP 56


>gnl|CDD|109515 pfam00460, Flg_bb_rod, Flagella basal body rod protein. 
          Length = 31

 Score = 29.4 bits (67), Expect = 0.28
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 7  FQIASQHANWLSERQKIVSENIANASTPNYR 37
             A    N       +++ NIANA+T  Y+
Sbjct: 1  LYTAVSALNAQQIALDVIANNIANANTTGYK 31


>gnl|CDD|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and
          secretion].
          Length = 423

 Score = 27.2 bits (60), Expect = 1.4
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 18 SERQKIVSENIANASTPNYRAKDISSFETILNQNFLMART 57
               ++S NIANA+T  ++      F  + +Q+ + A T
Sbjct: 16 QFALDVISNNIANANTTGFKRSRA-EFSDMFSQSLVGAST 54


>gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility
          and secretion].
          Length = 552

 Score = 25.4 bits (55), Expect = 5.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 23 IVSENIANASTPNY 36
          +   NI+NA+TP Y
Sbjct: 23 VTGHNISNANTPGY 36


>gnl|CDD|33017 COG3204, COG3204, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 316

 Score = 24.9 bits (54), Expect = 5.9
 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 37  RAKDISSFETILNQNFLMARTHETH-LKESDSSG 69
              D+S  E     N L+  + E+  L E D SG
Sbjct: 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264


>gnl|CDD|110158 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
           O-methyltransferase (PCMT). 
          Length = 205

 Score = 24.6 bits (54), Expect = 7.4
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%)

Query: 87  VQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130
           V   G  V I        HI  L E+  + ++KL    + VV G
Sbjct: 95  VGEVGRVVSIE-------HIPELVEIARRNLEKLGLENVIVVVG 131


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,411,408
Number of extensions: 59645
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 11
Length of query: 130
Length of database: 6,263,737
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,470,190
Effective search space: 210098930
Effective search space used: 210098930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)