RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780381|ref|YP_003064794.1| flagellar basal body rod protein FlgB [Candidatus Liberibacter asiaticus str. psy62] (130 letters) >gnl|CDD|32000 COG1815, FlgB, Flagellar basal body protein [Cell motility and secretion]. Length = 133 Score = 90.0 bits (223), Expect = 2e-19 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 13/137 (9%) Query: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETIL-------NQNFL 53 M F + + + S RQ++++ NIANA TP Y+AKD+ FE++L N Sbjct: 2 MSFDRAFGLLQKALDVRSLRQEVIANNIANADTPGYKAKDV-DFESVLKKALAGNNTTLA 60 Query: 54 MARTHETHLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELN 113 +A+T HL +++ + LD+ GNTV + E+ + + +Y+ Sbjct: 61 LAKTSTRHLGPAENIDPTDA-----SLLDRIGDQPNDGNTVDLDREMTEFAKNQLMYQAL 115 Query: 114 TKLIKKLNSMVMHVVRG 130 +K M+ V++G Sbjct: 116 LSFLKSQIKMLNSVLKG 132 >gnl|CDD|34398 COG4787, FlgF, Flagellar basal body rod protein [Cell motility and secretion]. Length = 251 Score = 31.5 bits (71), Expect = 0.066 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 14 ANWLSERQKIVSENIANASTPNYRAKDISSFETILNQN 51 A+ L E+Q + + N+ANAST +RA +++ + Sbjct: 12 ASQLLEQQAVTANNLANASTTGFRA-QLNAARAVQVHG 48 >gnl|CDD|34397 COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion]. Length = 265 Score = 30.2 bits (68), Expect = 0.16 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Query: 20 RQKIVSENIANASTPNYRAKDISSFETILNQNF 52 + ++S N+AN +T ++ +D + FE +L Q Sbjct: 18 KLDVISNNLANVNTTGFK-RDRAEFEDLLYQTI 49 >gnl|CDD|31746 COG1558, FlgC, Flagellar basal body rod protein [Cell motility and secretion]. Length = 137 Score = 29.5 bits (66), Expect = 0.26 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPN------YRAKDISSFETILNQN 51 M + F IA + S R ++S NIANA + YR K + F L Sbjct: 1 MSLFSIFNIAGSALSAQSLRLNVISSNIANADSTRTPDGGPYRRKQV-VFSAELFAP 56 >gnl|CDD|109515 pfam00460, Flg_bb_rod, Flagella basal body rod protein. Length = 31 Score = 29.4 bits (67), Expect = 0.28 Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 7 FQIASQHANWLSERQKIVSENIANASTPNYR 37 A N +++ NIANA+T Y+ Sbjct: 1 LYTAVSALNAQQIALDVIANNIANANTTGYK 31 >gnl|CDD|31935 COG1749, FlgE, Flagellar hook protein FlgE [Cell motility and secretion]. Length = 423 Score = 27.2 bits (60), Expect = 1.4 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 18 SERQKIVSENIANASTPNYRAKDISSFETILNQNFLMART 57 ++S NIANA+T ++ F + +Q+ + A T Sbjct: 16 QFALDVISNNIANANTTGFKRSRA-EFSDMFSQSLVGAST 54 >gnl|CDD|31448 COG1256, FlgK, Flagellar hook-associated protein [Cell motility and secretion]. Length = 552 Score = 25.4 bits (55), Expect = 5.1 Identities = 7/14 (50%), Positives = 10/14 (71%) Query: 23 IVSENIANASTPNY 36 + NI+NA+TP Y Sbjct: 23 VTGHNISNANTPGY 36 >gnl|CDD|33017 COG3204, COG3204, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 316 Score = 24.9 bits (54), Expect = 5.9 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%) Query: 37 RAKDISSFETILNQNFLMARTHETH-LKESDSSG 69 D+S E N L+ + E+ L E D SG Sbjct: 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 >gnl|CDD|110158 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT). Length = 205 Score = 24.6 bits (54), Expect = 7.4 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 7/44 (15%) Query: 87 VQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVRG 130 V G V I HI L E+ + ++KL + VV G Sbjct: 95 VGEVGRVVSIE-------HIPELVEIARRNLEKLGLENVIVVVG 131 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.315 0.128 0.365 Gapped Lambda K H 0.267 0.0701 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 1,411,408 Number of extensions: 59645 Number of successful extensions: 135 Number of sequences better than 10.0: 1 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 11 Length of query: 130 Length of database: 6,263,737 Length adjustment: 83 Effective length of query: 47 Effective length of database: 4,470,190 Effective search space: 210098930 Effective search space used: 210098930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (23.9 bits)