RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780381|ref|YP_003064794.1| flagellar basal body rod
protein FlgB [Candidatus Liberibacter asiaticus str. psy62]
(130 letters)
>gnl|CDD|168340 PRK06003, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 126
Score = 132 bits (335), Expect = 2e-32
Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETIL-NQNFLMARTHE 59
M PI F +AS+ A WLS RQ V+ NIANA+TP YRA+D+ F +L MA T
Sbjct: 1 MSPIYLFDLASRQAQWLSVRQATVAGNIANANTPGYRARDVQPFADVLDKTGLTMAATSP 60
Query: 60 THLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKK 119
HL S + V EA D + V SGN+V + E+ K+G IK Y LNT ++K
Sbjct: 61 GHLGASAT-----GIDVTEARPDDSWEVTHSGNSVSLEQEMMKAGEIKRQYSLNTAIVKS 115
Query: 120 LNSMVMHVVRG 130
+ M++ V+G
Sbjct: 116 FHRMMLMTVKG 126
>gnl|CDD|162337 TIGR01396, FlgB, flagellar basal-body rod protein FlgB. This model
represents FlgB, one of several components of bacterial
flagella that share a domain described by pfam model
pfam00460. FlgB is part of the basal body.
Length = 131
Score = 64.7 bits (158), Expect = 7e-12
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESD 66
F + Q + S RQ++++ NIAN TP Y+AKD+ SFE L ++ R L +D
Sbjct: 5 FGLLQQALDVRSLRQEVIANNIANVDTPGYKAKDV-SFEAELKKSLDKQRNSTLTLALTD 63
Query: 67 SSGLHWNAH-----VIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLN 121
++ H NA D TT V+ GN V I +E+ + + Y+ T +
Sbjct: 64 TNPRHLNAQDSNSVEPSLQYDYTTQVKNDGNNVDIDSEMAELAQNQMHYQALTNFLNGKI 123
Query: 122 SMVMHVVR 129
+ +V+R
Sbjct: 124 KGLNYVLR 131
>gnl|CDD|183633 PRK12627, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 128
Score = 61.7 bits (150), Expect = 5e-11
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSF-ETILNQNFLMAR-TH 58
+ + F++AS A ERQ +V+ N+ANA TP YRA+D++ F E+ + R T
Sbjct: 2 FEKLEIFRMASAMARHAGERQAVVARNVANADTPGYRARDLADFAESYRAEGTTGMRATR 61
Query: 59 ETHLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKS 103
HL + + D +GN+V + E+ ++
Sbjct: 62 PGHLNGAAAGAADP------VVTDAGGPASPNGNSVSLEEEMLRA 100
>gnl|CDD|180346 PRK06004, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 127
Score = 55.9 bits (135), Expect = 3e-09
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 20/116 (17%)
Query: 16 WLSERQKIVSENIANASTPNYRAKDIS--SFETILNQN--------FLMARTHETHLKES 65
W ERQK+++EN+ANA TP +R +D+ F+ M RT +H+ +
Sbjct: 8 WHQERQKVLAENVANADTPGFRPRDLVEPKFDASGQAQAAGASTGGLGMMRTSASHMAPA 67
Query: 66 DSSGLHWNAHVIEAPLDQTTGVQV--SGNTVGITNELYKSGHIKYLYELNTKLIKK 119
+S ++A + G + +GN V + +E+ K + Y L +K
Sbjct: 68 GASP-SFDA-------RRGAGFETRPAGNAVNLEDEMLKVSDNQMDYAAAASLYQK 115
>gnl|CDD|180196 PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 137
Score = 54.5 bits (132), Expect = 8e-09
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 25/127 (19%)
Query: 18 SERQKIVSENIANASTPNYRAKDISSFETILNQ---------NFLMARTHETHLKESDSS 68
++RQ++++ NIANA TP Y+A+DI FE++L +ART E H+ ++
Sbjct: 20 AQRQEVIASNIANADTPGYKARDI-DFESVLAVMIFGRQSGSGLELARTSERHIPAQATT 78
Query: 69 GLHWNAHVIEAPLDQTTGVQVS--GNTVGI---TNELYKSGHIKYLYELNTKLIKKLNSM 123
+A L Q S GNTV + E K+ I Y L T L K +
Sbjct: 79 SP-------KAELLYRDPHQPSNDGNTVDMDVERTEFAKN-SIMYQALL-TALNGKFKGL 129
Query: 124 VMHVVRG 130
M V++G
Sbjct: 130 -MSVIQG 135
>gnl|CDD|183631 PRK12625, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 132
Score = 49.8 bits (119), Expect = 2e-07
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 18 SERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNAHVI 77
++R +++S NIANA TP+Y+A+D+ F + AR+ + L+ + S H++ +
Sbjct: 20 AQRAEVISSNIANADTPHYKARDV-DFSAAMQA----ARSQQQGLEMTGSDEKHFD---L 71
Query: 78 EAPLDQTTGVQV-------SGNTVGITNE 99
A Q +V GNTV I E
Sbjct: 72 AALTGQHVKYRVPNQPDTGDGNTVDIQQE 100
>gnl|CDD|183682 PRK12685, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 116
Score = 42.5 bits (100), Expect = 3e-05
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 4 ITFFQIASQHANWLS---ERQKIVSENIANASTPNYRAKDISSFETILNQ 50
I H L ER K+++ N+ANA TP Y+A+D+ F+ +++Q
Sbjct: 3 INLDAALGVHPQTLDFRVERSKVLASNLANAETPGYKARDL-DFKAVMSQ 51
>gnl|CDD|171613 PRK12621, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 136
Score = 42.0 bits (99), Expect = 4e-05
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 19 ERQKIVSENIANASTPNYRAKDISSFETILNQNFL-------MARTHETHL 62
+RQ +V N+AN +TP Y+ +++ FE L Q L M RT + HL
Sbjct: 21 QRQNVVMSNLANVNTPGYKPREL-EFEKEL-QAALGLDAKGKMTRTEKNHL 69
>gnl|CDD|183632 PRK12626, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 162
Score = 40.7 bits (95), Expect = 1e-04
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 20 RQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNAHVIEA 79
RQ+++S NIANA TP YRA+D+ A T LK++D NA +
Sbjct: 22 RQELLSSNIANADTPGYRARDVD-----------FASTLARALKQTDGGAAASNAAQL-- 68
Query: 80 PLDQTTGVQVSGNTVGITNELYKSGHIK 107
P+ Q GV SG ++ T + +G++K
Sbjct: 69 PMAQPAGV-TSGMSMASTAPGHMAGNVK 95
>gnl|CDD|183630 PRK12623, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 131
Score = 39.8 bits (93), Expect = 2e-04
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
Query: 18 SERQKIVSENIANASTPNYRAKDISSFETILNQ--NFLMARTHETHLKESDSSGLHWNAH 75
S R K++S NIAN +T Y+ ++ E + N N + T+E H+ + G
Sbjct: 24 SYRGKVISNNIANVNTKGYKRHYVTFEENLKNNLDNLELKTTNEKHINDGVEFG------ 77
Query: 76 VIEAPLDQTTGVQVSGNTVGITNE 99
I+ +D++T ++ GN V I NE
Sbjct: 78 QIKEKVDESTSMRTDGNNVDIDNE 101
>gnl|CDD|183629 PRK12622, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 135
Score = 39.1 bits (91), Expect = 3e-04
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 9 IASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDS- 67
++ ++ + LS RQ ++++NIAN TPN++ + +FE+ L + L ++ L +
Sbjct: 10 LSHRYLDVLSLRQSVIADNIANVDTPNFKRSKV-TFESELERAILNEDKNDLSLIRGNDK 68
Query: 68 --SGLHWNAHVIEAP---LDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKL 116
SG ++ P LD + + +GN V I +E+ + +Y L T +
Sbjct: 69 HLSGFKELGYLDVKPHRMLDHLSTLNNNGNNVDIDSEMKALVQNQMMYHLFTNI 122
>gnl|CDD|180697 PRK06797, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 135
Score = 38.8 bits (90), Expect = 4e-04
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 11 SQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGL 70
+ N+L ++ VS NIANA+TP Y+A+D+ +F +N++ + +++ LK +
Sbjct: 9 GHYMNYLVTKRNTVSSNIANANTPGYKAQDV-TFAEQMNKSSALYKSNAADLKSNPDLYQ 67
Query: 71 HWNAHVIEAPLDQTTG--------VQVSGNTVGITNEL 100
H+ T GN+V +T E+
Sbjct: 68 TNEMHLPTVNTKNTYAKIQTKSMQTNKDGNSVDVTTEM 105
>gnl|CDD|183628 PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 132
Score = 38.5 bits (89), Expect = 5e-04
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 3 PIT-FFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETIL------NQNFLMA 55
P T F + +R K+++ N++N TP Y+AKD+ +FE L LM
Sbjct: 4 PFTSFLGVHGDALTLREQRMKLIASNLSNVDTPGYKAKDL-NFEAALKSAQGEQDGGLMQ 62
Query: 56 RTHETHLKESDSSGLHWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTK 115
T H E GL N I DQ + + GNTV E G Y +
Sbjct: 63 TTDAKHY-EVGGGGL--NPFQITRESDQPS---LDGNTVDPDAERAAYGRAALEYRASLS 116
Query: 116 LIK-KLNSMV 124
++ K+ SM+
Sbjct: 117 FLESKVRSML 126
>gnl|CDD|163298 TIGR03506, FlgEFG_subfam, fagellar hook-basal body proteins.
This model encompasses three closely related flagellar
proteins usually denoted FlgE, FlgF and FlgG. The names
have often been mis-assigned, however. Three equivalog
models, TIGR02489, TIGR02490 and TIGR00488,
respectively, separate the individual forms into three
genome-context consistent groups. The major differences
between these genes are architectural, with variable
central sections between relatively conserved N- and
C-terminal domains. More distantly related are two
other flagellar apparatus familis, FlgC (TIGR01395)
which consists of little else but the N-and C-terminal
domains and FlgK (TIGR02492) with a substantial but
different central domain.
Length = 231
Score = 38.0 bits (89), Expect = 7e-04
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQN 51
A N S +++ NIAN +T ++ + F+ +L+Q+
Sbjct: 3 LYTALSGLNAQSSALDVIANNIANVNTTGFKR-SRAEFQDLLSQS 46
>gnl|CDD|183637 PRK12632, flgC, flagellar basal body rod protein FlgC;
Provisional.
Length = 130
Score = 36.7 bits (85), Expect = 0.002
Identities = 16/29 (55%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 18 SERQKIVSENIANASTPNYRAKDISSFET 46
+ R + VSENIANA TP YR K SF+
Sbjct: 19 ALRLRHVSENIANADTPGYRRK-TVSFQE 46
>gnl|CDD|139220 PRK12782, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 138
Score = 33.2 bits (76), Expect = 0.018
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 8 QIASQHANWLSERQKIVSENIANA----STPN---YRAKDISSFETILNQ 50
+IAS S R ++VSEN+ANA TP Y K + +F L++
Sbjct: 10 RIASSGLEAQSTRLRVVSENLANAQSTGRTPGADPYARKTV-TFRAELDR 58
>gnl|CDD|183642 PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 246
Score = 32.5 bits (75), Expect = 0.031
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 4/29 (13%)
Query: 10 ASQHANWLSERQKIVSENIANASTPNYRA 38
ASQ+ N +Q +V+ N+ANASTP +RA
Sbjct: 12 ASQNLN----QQAVVANNLANASTPGFRA 36
>gnl|CDD|183768 PRK12818, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 256
Score = 32.0 bits (73), Expect = 0.048
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 17 LSERQKIVSENIANASTPNYRAKDIS--SFETILNQNF 52
L +Q +++ N+AN +T Y++ +++ SFE +L +N+
Sbjct: 15 LEAKQDVITNNLANVNTVGYKSDNLAFKSFEDVLIENY 52
>gnl|CDD|180282 PRK05841, flgE, flagellar hook protein FlgE; Validated.
Length = 603
Score = 31.7 bits (72), Expect = 0.051
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 24 VSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESDSSGLHWNAHVIEAPLDQ 83
+S NIAN +T YR+ +I F+T+ + + + + + +D +
Sbjct: 22 LSNNIANVNTLGYRS-NIPEFKTLFSSH--LDALNAKSVVANDRN--------------- 63
Query: 84 TTGVQVSGNTVGITNELYKS 103
GV S N + + YK
Sbjct: 64 -YGVTGSSNAISNKDGEYKP 82
>gnl|CDD|183643 PRK12642, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 241
Score = 31.9 bits (73), Expect = 0.052
Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETIL 48
MQ + ++SQ A L +R +++N+AN +T +RA ++ F+T++
Sbjct: 1 MQSGLYVALSSQMA--LEKRLDTIADNVANVNTVGFRATEV-KFDTVV 45
>gnl|CDD|139107 PRK12624, flgB, flagellar basal body rod protein FlgB; Provisional.
Length = 143
Score = 31.2 bits (70), Expect = 0.075
Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 20 RQKIVSENIANASTPNYRAKDISSFETILNQNF---LMARTHETHLKESDS------SGL 70
++K++S+NIANA P+++ ++ FE+++ + + + E + SD L
Sbjct: 24 KRKVISDNIANADVPHFKRSEV-IFESMIKRAIESEKIEKEKEVPTQISDERHIQFFKPL 82
Query: 71 HWNAHVIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYELNTKLIKKLNSMVMHVVR 129
+ + LD T ++ GN V + E+ ++ + + Y L + + + ++ V+R
Sbjct: 83 DYREVQPKTNLDYLTTMRADGNNVDVEKEVVEASNSQMQYMLMIERLNQNYRLLKQVMR 141
>gnl|CDD|180197 PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.
Length = 135
Score = 30.6 bits (70), Expect = 0.11
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Query: 18 SERQKIVSENIANAST-------PNYRAKDISSFETILNQ 50
S+R ++S NIANA + P YR K + F L+
Sbjct: 18 SQRLNVISSNIANADSTAAPDGDP-YRRKQV-VFAAELDP 55
>gnl|CDD|75964 PRK07182, flgB, flagellar basal body rod protein FlgB; Reviewed.
Length = 148
Score = 30.6 bits (68), Expect = 0.13
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 20 RQKIVSENIANASTPNYRAKDI 41
R +++S N+AN +TPN++AKDI
Sbjct: 22 RAELLSANLANVNTPNFQAKDI 43
>gnl|CDD|183627 PRK12619, flgB, flagellar basal body rod protein FlgB;
Provisional.
Length = 130
Score = 30.1 bits (67), Expect = 0.15
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 5 TFFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETI 47
++F I ++ +R +++ NIAN +TPN++A+D+ E +
Sbjct: 7 SYFGIHAKALIARDQRASVLANNIANVNTPNFKARDVDFNEVL 49
>gnl|CDD|181014 PRK07521, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 483
Score = 30.3 bits (69), Expect = 0.15
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 23 IVSENIANASTPNY 36
+VS NIANA TP Y
Sbjct: 23 VVSRNIANAGTPGY 36
>gnl|CDD|183684 PRK12689, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 253
Score = 29.7 bits (67), Expect = 0.23
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 19 ERQ-KIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETHLKESD 66
ERQ +V+ N+AN +T ++A + L Q +LM HE + + D
Sbjct: 16 ERQLDVVANNVANVNTNGFKA------RSSLFQEYLMPGAHEDNFQRPD 58
>gnl|CDD|139117 PRK12643, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 209
Score = 29.0 bits (64), Expect = 0.34
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 19 ERQKIVSENIANASTPNYRAK 39
E Q + + N+ANASTP +RA+
Sbjct: 17 ELQAVTANNLANASTPGFRAQ 37
>gnl|CDD|162886 TIGR02492, flgK_ends, flagellar hook-associated protein FlgK.
The flagellar hook-associated protein FlgK of bacterial
flagella has conserved N- and C-terminal domains. The
central region is highly variable in length and
sequence, and often contains substantial runs of
low-complexity sequence. This model is built from an
alignment of FlgK sequences with the central region
excised. Note that several other proteins of the
flagellar apparatus also are homologous in the N- and
C-terminal regions to FlgK, but are excluded from this
model.
Length = 322
Score = 28.8 bits (65), Expect = 0.38
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 23 IVSENIANASTPNY 36
+ S NIANA+TP Y
Sbjct: 19 VTSNNIANANTPGY 32
>gnl|CDD|183685 PRK12690, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 238
Score = 27.7 bits (62), Expect = 0.91
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 23 IVSENIANASTPNYRA 38
+V+ NIANAST +R
Sbjct: 21 VVANNIANASTTGFRR 36
>gnl|CDD|130462 TIGR01395, FlgC, flagellar basal-body rod protein FlgC. This
model represents FlgC, one of several components of
bacterial flagella that share a domain described by
pfam model pfam00460. FlgC is part of the basal body.
Length = 135
Score = 26.6 bits (59), Expect = 1.8
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 18 SERQKIVSENIANA---STPN---YRAKDISSFETILNQ 50
R +VS N+ANA TP YR + FE L Q
Sbjct: 15 RVRMNVVSSNLANADSTRTPAGDPYRRRRP-VFEAELFQ 52
>gnl|CDD|105809 PRK12641, flgF, flagellar basal body rod protein FlgF; Reviewed.
Length = 252
Score = 26.8 bits (59), Expect = 1.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 14 ANWLSERQKIVSENIANASTPNYRAK 39
AN L E+Q I++ N+AN ST ++ K
Sbjct: 12 ANKLLEKQAIIANNLANISTTGFKEK 37
>gnl|CDD|180703 PRK06803, flgE, flagellar hook protein FlgE; Validated.
Length = 402
Score = 26.7 bits (59), Expect = 2.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 7 FQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQ 50
F IA N +++ +S NIAN+ST ++ + F +I N
Sbjct: 3 FNIALSGLNATTQQLNTISNNIANSSTKGFKGSR-TEFSSIYNG 45
>gnl|CDD|131541 TIGR02488, flgG_G_neg, flagellar basal-body rod protein FlgG,
Gram-negative bacteria. This family consists of the
FlgG protein of the flagellar apparatus in the
Proteobacteria and spirochetes.
Length = 259
Score = 26.2 bits (58), Expect = 2.4
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 23 IVSENIANASTPNYRAKDISSFETILNQN 51
++S N+AN +T ++ KD + FE +L Q
Sbjct: 18 VISNNLANVNTTGFK-KDRAEFEDLLYQT 45
>gnl|CDD|183687 PRK12693, flgG, flagellar basal body rod protein FlgG;
Provisional.
Length = 261
Score = 26.0 bits (58), Expect = 2.7
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 23 IVSENIANASTPNYRAKDISSFETILNQN 51
++S N+AN +T ++ K + FE +L Q
Sbjct: 21 VISNNLANVNTTGFK-KSRAVFEDLLYQT 48
>gnl|CDD|116422 pfam07808, RED_N, RED-like protein N-terminal region. This
family contains sequences that are similar to the
N-terminal region of Red protein. This and related
proteins contain a RED repeat which consists of a
number of RE and RD sequence elements. The region in
question has several conserved NLS sequences and a
putative trimeric coiled-coil region, suggesting that
these proteins are expressed in the nucleus. The
function of Red protein is unknown, but efficient
sequestration to nuclear bodies suggests that its
expression may be tightly regulated of that the protein
self-aggregates extremely efficiently.
Length = 238
Score = 26.0 bits (57), Expect = 3.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 19 ERQKIVSENIANASTPNYRA------KDISSFE----TILNQNFLMARTHETHLK 63
ER+K ++++ +S YRA DI + E TI FL THL
Sbjct: 30 ERRKGINKDYDPSSLAAYRAVAPDAKSDIDAAENRNNTIDESKFLGGDVEHTHLV 84
>gnl|CDD|181099 PRK07739, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 507
Score = 25.7 bits (57), Expect = 3.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 23 IVSENIANASTPNY 36
+ NIANA+TP Y
Sbjct: 24 VTGHNIANANTPGY 37
>gnl|CDD|183767 PRK12817, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 260
Score = 25.4 bits (56), Expect = 4.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 19 ERQKIVSENIANASTPNYRAKDIS 42
E+ +S N+AN +T Y+ +D+S
Sbjct: 17 EKLDSISNNLANVNTTGYKREDVS 40
>gnl|CDD|180769 PRK06945, flgK, flagellar hook-associated protein FlgK;
Validated.
Length = 651
Score = 25.0 bits (55), Expect = 5.7
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 27 NIANASTPNY 36
NI+NA+TP Y
Sbjct: 25 NISNAATPGY 34
>gnl|CDD|183686 PRK12691, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 262
Score = 24.5 bits (54), Expect = 7.4
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 23 IVSENIANASTPNYRAKDISSFETILNQNFLMA 55
++S NIAN +T ++ + + F+ +L Q
Sbjct: 20 VISNNIANMNTTGFK-RQRAEFQDLLYQQERRV 51
>gnl|CDD|183769 PRK12819, flgG, flagellar basal body rod protein FlgG; Reviewed.
Length = 257
Score = 24.5 bits (53), Expect = 7.7
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 19 ERQKIVSENIANASTPNYRAKDISS 43
+R + S N+ANA T ++A++++S
Sbjct: 16 QRINVHSNNVANAQTTGFKAENMTS 40
>gnl|CDD|181503 PRK08617, PRK08617, acetolactate synthase; Reviewed.
Length = 552
Score = 24.4 bits (54), Expect = 8.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 11/38 (28%)
Query: 1 MQPITFFQIASQHANWLSERQKIVSENIANASTPNYRA 38
+PIT + Q + L SE +ANA +RA
Sbjct: 122 FRPITKYSAEVQDPDNL-------SEVLANA----FRA 148
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.315 0.128 0.365
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,934,942
Number of extensions: 101878
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 52
Length of query: 130
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,201,009
Effective search space: 197447423
Effective search space used: 197447423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)