RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780381|ref|YP_003064794.1| flagellar basal body rod
protein FlgB [Candidatus Liberibacter asiaticus str. psy62]
         (130 letters)



>2es9_A Putative cytoplasmic protein; structural genomics, PSI,
           protein structure initiative, northeast structural
           genomics consortium, NESG; 2.00A {Salmonella typhimurium
           LT2} (A:)
          Length = 115

 Score = 25.3 bits (55), Expect = 2.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 76  VIEAPLDQTTGVQVSGNTVGITNELYKSGHIKYLYEL 112
            IE  LD   G   S +     +E    G +KYL++L
Sbjct: 12  AIEKALDFIGGXNTSASVPHSXDESTAKGILKYLHDL 48


>3f31_A Spectrin alpha chain, brain; LONE helix followed by A
          triple helical bundle, actin capping, actin-binding,
          alternative splicing, calcium; 2.30A {Homo sapiens}
          (A:31-149)
          Length = 119

 Score = 24.1 bits (52), Expect = 6.6
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 6  FFQIASQHANWLSERQKIVSENIANASTPNYRAKDISSFETILNQNFLMARTHETH 61
          F + A +   W+ E+ +I S+            KD ++ +  L ++       + +
Sbjct: 21 FQRDAEELEKWIQEKLQIASDEN---------YKDPTNLQGKLQKHQAFEAEVQAN 67


>3bhw_A Uncharacterized protein; structural genomics, unknown
          function, PSI-2, protein structure initiative; 1.50A
          {Magnetospirillum magneticum amb-1} (A:)
          Length = 209

 Score = 24.0 bits (52), Expect = 6.6
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 12 QHANWLSERQKIVSENIANASTPNYRAKDISS 43
          +       R  I  EN+    +P   AK  SS
Sbjct: 31 EGVTEDQWRHAIEVENVLQRRSPG-TAKRQSS 61


>1owa_A Spectrin alpha chain, erythrocyte; triple helical bundle,
          cytokine; NMR {Homo sapiens} (A:50-156)
          Length = 107

 Score = 23.7 bits (51), Expect = 8.3
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 6  FFQIASQHANWLSERQKIVSENIAN 30
          F + A     W+ E+  I+++    
Sbjct: 9  FKRDADDLGKWIMEKVNILTDKSYE 33


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0587    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 862,528
Number of extensions: 30278
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 7
Length of query: 130
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 53
Effective length of database: 2,353,064
Effective search space: 124712392
Effective search space used: 124712392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)