HHsearch alignment for GI: 254780382 and conserved domain: CHL00122
>CHL00122 secA preprotein translocase subunit SecA; Validated.
Probab=99.82 E-value=7.4e-19 Score=140.53 Aligned_cols=280 Identities=18% Similarity=0.233 Sum_probs=162.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
Q ss_conf 87987898999999999769979998279851789999999999860652147827999828589999999998741023
Q gi|254780382|r 19 AGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKN 98 (465)
Q Consensus 19 ~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~ 98 (465)
T Consensus 73 lg~r-~~dvQl~gg~~Lh~G~--iaEM~TGEGKTL~atlp~ylnal~Gk------gvhvvTvNdYLA~RDae~m~~vy~~ 143 (891)
T CHL00122 73 LGLR-HFDVQLIGGLVLNDGK--IAEMKTGEGKTLVATLPAYLNALTGK------GVHIVTVNDYLARRDSEWMGQIYRF 143 (891)
T ss_pred CCCC-CCHHHHHHHHHHHCCC--EEEECCCCCHHHHHHHHHHHHHHCCC------CEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 4897-6469999899984595--24650688579999999999975599------7299806456568669999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHH-HHHHHCCC------CCCCCCEEECCCCCCCCC-CCCC-------
Q ss_conf 33221000012222222222210112210221023-33320000------001210010255100000-0010-------
Q gi|254780382|r 99 YNLTVALLIGGIPFEAQNKKLERGADVLICTPGRI-LDHFNRGK------LLMNNIEILVIDEADRML-DMGF------- 163 (465)
Q Consensus 99 ~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl-~~~l~~~~------~~l~~~~~lViDEah~l~-~~gf------- 163 (465)
T Consensus 144 lGlsvg~i~~~~~~~e--r~~aY~~DItY~Tn~e~gFDyLRDnm~~~~~~~vqr~~~~aIvDEvDSiLIDEArtPLiIsg 221 (891)
T CHL00122 144 LGLSVGLIQEDMSIEE--RKQNYKADITYVTNSELGFDYLRDNMALSLSEVVQRPFNYCIIDEVDSILIDEARTPLIISG 221 (891)
T ss_pred HCCEEEEECCCCCHHH--HHHHHCCCCEEECCCCEECCCCCCCCCCCHHHHHCCCCCEEEEECHHHHHHHCCCCCEEEEC
T ss_conf 2966702089999799--99983589279788762225666332368788408899737886404554322568858627
Q ss_pred --------HHHHHHHHHHHCCC--------CCCCCCCCC--------------CC------CCCCC-CC-CC-CCCCCCC
Q ss_conf --------03578875431022--------222333432--------------11------22221-11-12-2222100
Q gi|254780382|r 164 --------IPYIQNITSLVPFT--------RQTLLFSAT--------------MT------DELQK-VS-EN-FLQNPKR 204 (465)
Q Consensus 164 --------~~~i~~i~~~~~~~--------~q~i~~SAT--------------~~------~~v~~-l~-~~-~l~~~~~ 204 (465)
T Consensus 222 ~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~v~lte~G~~~~e~~l~~~~ly~~~~~~~~~i~~al~A~~lf~~d~dY 301 (891)
T CHL00122 222 PVETPIDKYIVAAEIANYLEKDVHYEVDEKNRNIILTDQGILQCEKILKIKDLYDPEDPWIPYILNAIKAKELFIKNVHY 301 (891)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCEEECHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 98774478999999986437766678622315785063269999861375344785433999999999999876069748
Q ss_pred ------------------------------------CCCCCCCCCCCCC-------------------------------
Q ss_conf ------------------------------------1344432123464-------------------------------
Q gi|254780382|r 205 ------------------------------------IEVNTPSSTAETI------------------------------- 217 (465)
Q Consensus 205 ------------------------------------i~v~~~~~~~~~i------------------------------- 217 (465)
T Consensus 302 iV~d~~v~ivDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~A~IT~Qn~Fr~y~klsGMTGTA~te~~Ef~~iY~ 381 (891)
T CHL00122 302 IVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENVPIQQETQTLASITYQNFFLLYPKLSGMTGTAKTEEVELEKIYN 381 (891)
T ss_pred EEECCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHCCHHCCCCCCCHHHHHHHHHHHC
T ss_conf 99889899986788887899935647799999871887788872136665999985450422675676878999999858
Q ss_pred ---------------CCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf ---------------21111122221102444321012234565067762134432222222222332222234542033
Q gi|254780382|r 218 ---------------EHCFVATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQR 282 (465)
Q Consensus 218 ---------------~~~~~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~ 282 (465)
T Consensus 382 l~Vv~IPtn~p~~R~D~~d~vy~t~~~K~~Av~~ei~~~h~~GqPVLvGT~SVe~SE~ls~~L~~~gi~h~vLNAk~~n~ 461 (891)
T CHL00122 382 LEVICIPTHRPMQRKDLPDLVYKTEYSKWKAIADECFDMHKIGRPILVGTTSVEKSELLSQLLEEYQLPHNLLNAKPENV 461 (891)
T ss_pred CCEEECCCCCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCCCH
T ss_conf 84798899998500308895778899999999999999996799989834655889999999997478622023884307
Q ss_pred HHHH-HHHHHCCCC-CEEEEEHHHHHHHHCC
Q ss_conf 3234-444201355-2388884664644078
Q gi|254780382|r 283 SRMK-ILSNFKEGT-IQLMVASDLAARGLDI 311 (465)
Q Consensus 283 ~R~~-~~~~F~~g~-~~vLV~Td~~~~GiDi 311 (465)
T Consensus 462 ~~EA~IiA~--AG~~gaVTIATNMAGRGTDI 490 (891)
T CHL00122 462 KRESEIIAQ--AGRKGAITIATNMAGRGTDI 490 (891)
T ss_pred HHHHHHHHH--CCCCCCEEEECCCCCCCCCE
T ss_conf 899999995--69999389715556898784