HHsearch alignment for GI: 254780382 and conserved domain: COG0553

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=98.69  E-value=2.9e-08  Score=72.17  Aligned_cols=122  Identities=19%  Similarity=0.301  Sum_probs=100.5

Q ss_pred             HHHHHHHCC--CCCCCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCEEEEEHHH
Q ss_conf             244432101--2234565--067762134432222222222332222234542033323444420135--5238888466
Q gi|254780382|r  231 KCALLQQLL--QSQDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG--TIQLMVASDL  304 (465)
Q Consensus       231 k~~~l~~l~--~~~~~~~--k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g--~~~vLV~Td~  304 (465)
T Consensus       693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~ka  772 (866)
T COG0553         693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA  772 (866)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHC
T ss_conf             56899999888998627772348886660599999999985587579873787521288999998646677579975300


Q ss_pred             HHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCE--EEEEEECHH
Q ss_conf             464407887650020024677899887521024588853--999977888
Q gi|254780382|r  305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG--KAFTLVAKE  352 (465)
Q Consensus       305 ~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~g~~G--~~i~~~~~~  352 (465)
T Consensus       773 gg~glnLt~a~~vi~~d~~wNp~~e~Qa~dRa~RigQ~~~v~v~r~i~~~  822 (866)
T COG0553         773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG  822 (866)
T ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
T ss_conf             57661214565246607763667999999878760780159999841137