HHsearch alignment for GI: 254780382 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=98.69 E-value=2.9e-08 Score=72.17 Aligned_cols=122 Identities=19% Similarity=0.301 Sum_probs=100.5
Q ss_pred HHHHHHHCC--CCCCCCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC--CCEEEEEHHH
Q ss_conf 244432101--2234565--067762134432222222222332222234542033323444420135--5238888466
Q gi|254780382|r 231 KCALLQQLL--QSQDTMK--NGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEG--TIQLMVASDL 304 (465)
Q Consensus 231 k~~~l~~l~--~~~~~~~--k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g--~~~vLV~Td~ 304 (465)
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHC
T ss_conf 56899999888998627772348886660599999999985587579873787521288999998646677579975300
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCE--EEEEEECHH
Q ss_conf 464407887650020024677899887521024588853--999977888
Q gi|254780382|r 305 AARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRHG--KAFTLVAKE 352 (465)
Q Consensus 305 ~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~g~~G--~~i~~~~~~ 352 (465)
T Consensus 773 gg~glnLt~a~~vi~~d~~wNp~~e~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
T ss_conf 57661214565246607763667999999878760780159999841137