HHsearch alignment for GI: 254780382 and conserved domain: COG0553
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].
Probab=96.79 E-value=0.0024 Score=40.42 Aligned_cols=136 Identities=23% Similarity=0.292 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHH-----CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 9878989999999997-----69979998279851789999999999860652147827999828589999999998741
Q gi|254780382|r 21 YVKPTPIQIKTIPLVL-----QRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKY 95 (465)
Q Consensus 21 ~~~pt~iQ~~~i~~~l-----~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~ 95 (465)
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilad~mglGKTiq~i-~~l~~~~~~~~-~~~~~~liv~p~-s~~~nw~~e~~k~ 412 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTI-ALLLSLLESIK-VYLGPALIVVPA-SLLSNWKREFEKF 412 (866)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHH-HHHHHHHHHHC-CCCCCEEEECCH-HHHHHHHHHHHHH
T ss_conf 01104889986699999877623687757523342199999-99877776401-357872687147-7776799999861
Q ss_pred CCCCCCCCCCCCCCCC-CC---CCCCCCCCH-----HHHHHCCCCHHHHHH-HCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 0233322100001222-22---222222101-----122102210233332-00000012100102551000000
Q gi|254780382|r 96 GKNYNLTVALLIGGIP-FE---AQNKKLERG-----ADVLICTPGRILDHF-NRGKLLMNNIEILVIDEADRMLD 160 (465)
Q Consensus 96 ~~~~~l~~~~~~gg~~-~~---~~~~~l~~~-----~~IiV~TP~rl~~~l-~~~~~~l~~~~~lViDEah~l~~ 160 (465)
T Consensus 413 ~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 413 APDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred CCHHHH-HHHHCCCCCCCCHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 412100-23211531121036999999986213301018999999999750205542236776989978875404