HHsearch alignment for GI: 254780382 and conserved domain: COG0610
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].
Probab=99.19 E-value=4.3e-09 Score=77.52 Aligned_cols=298 Identities=19% Similarity=0.296 Sum_probs=147.1
Q ss_pred CCEEEECCCCCCHHHH-HHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9799982798517899-999999998606521478279998285899999999987410233322100001222222222
Q gi|254780382|r 39 HDVCGIAQTGTGKTAS-FVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNK 117 (465)
Q Consensus 39 ~dvi~~apTGsGKT~~-~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~ 117 (465)
T Consensus 274 ~~G~IWHtqGSGKTltm~~~A--~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~ 344 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA--RLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKE 344 (962)
T ss_pred CCEEEEECCCCCHHHHHHHHH--HHHHHC---CCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCC----CCCCHHHHHH
T ss_conf 723898406983789999999--999836---5999699996728899999999999887632044----4457999999
Q ss_pred CCCCHH-HHHHCCCCHHHHHHHCC-CCCCCCCE-EECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC--C-
Q ss_conf 221011-22102210233332000-00012100-102551000000010035788754310222223334321122--2-
Q gi|254780382|r 118 KLERGA-DVLICTPGRILDHFNRG-KLLMNNIE-ILVIDEADRMLDMGFIPYIQNITSLVPFTRQTLLFSATMTDE--L- 191 (465)
Q Consensus 118 ~l~~~~-~IiV~TP~rl~~~l~~~-~~~l~~~~-~lViDEah~l~~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~--v- 191 (465)
T Consensus 345 ~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G~~--~~~~~~~~~-~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 345 LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YGEL--AKLLKKALK-KAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHHCCCCCEEEEEECCCCHHHHCCCCCCCCCCCEEEEEECCCCCC-CHHH--HHHHHHHHC-CCEEEEEECCCCCCCCCC
T ss_conf 986589848999710264333333200047876799986401035-6078--999998703-670897517856402242
Q ss_pred --CCCCCCCCCC-------------CCCCCCC-CCCCCCCCCCCC--CCCCCC---------CC--------------CH
Q ss_conf --2111122222-------------1001344-432123464211--111222---------21--------------10
Q gi|254780382|r 192 --QKVSENFLQN-------------PKRIEVN-TPSSTAETIEHC--FVATYA---------QY--------------SK 230 (465)
Q Consensus 192 --~~l~~~~l~~-------------~~~i~v~-~~~~~~~~i~~~--~~~~~~---------~~--------------~~ 230 (465)
T Consensus 421 tt~~~fg~ylh~Y~i~~aI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r 500 (962)
T COG0610 421 TTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVR 500 (962)
T ss_pred CHHHHHCCEEEEEECCHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 03555174479986522323576332584031234532001245666669998422799999999987555687514488
Q ss_pred HH----HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC-----------C--------C----CCCCCCCCCCHHH
Q ss_conf 24----443210122345650677621344322222222223-----------3--------2----2222345420333
Q gi|254780382|r 231 KC----ALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ-----------G--------F----SVCAIHGNIDQRS 283 (465)
Q Consensus 231 k~----~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~-----------g--------~----~v~~lhg~l~~~~ 283 (465)
T Consensus 501 ~~~~a~~~~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 579 (962)
T COG0610 501 LIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDE 579 (962)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH-HHH
T ss_conf 9999999999998611558359999841687877678887751556665300528999861322320234455777-777
Q ss_pred HHHHHHH--HCCCCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCC--C--CCEEEEEEECH
Q ss_conf 2344442--0135523888846646440788765002002467789988752102458--8--85399997788
Q gi|254780382|r 284 RMKILSN--FKEGTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRA--G--RHGKAFTLVAK 351 (465)
Q Consensus 284 R~~~~~~--F~~g~~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~--g--~~G~~i~~~~~ 351 (465)
T Consensus 580 ~~~~~~r~~~~~d~~kllIV~dMlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g~ 652 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRGL 652 (962)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEE-ECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCH
T ss_conf 6533232127577876899977620467754201267-445544331899998864588788889579978146