HHsearch alignment for GI: 254780382 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=100.00 E-value=2.1e-34 Score=240.81 Aligned_cols=295 Identities=23% Similarity=0.301 Sum_probs=191.6
Q ss_pred CCCCHHHHHHHHHHHC----CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 8789899999999976----997999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r 22 VKPTPIQIKTIPLVLQ----RHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97 (465)
Q Consensus 22 ~~pt~iQ~~~i~~~l~----g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~ 97 (465)
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~-~~~~~~---~-----~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAE-AIAELK---R-----STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHH-HHHHHC---C-----CEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 8885999999999996222578679996799988999999-999826---9-----889997829999999999997348
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 33322100001222222222221011221022102333320000001210010255100000001003578875431022
Q gi|254780382|r 98 NYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLVPFT 177 (465)
Q Consensus 98 ~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~~~~ 177 (465)
T Consensus 106 ~~-~~~g~~-~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~~~~~~ 173 (442)
T COG1061 106 LN-DEIGIY-GGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILELLSAA 173 (442)
T ss_pred CC-CCCCEE-CCCCCCC-----CC-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH----HHHHHHCC
T ss_conf 86-766033-6872335-----77-7489998389764155554035666759997524578477999----99975103
Q ss_pred CCCCCCCCCCCCCCCCCCC---------------------CCCCCCCCCCCCCCCCCC-----CCCCCCC----------
Q ss_conf 2223334321122221111---------------------222221001344432123-----4642111----------
Q gi|254780382|r 178 RQTLLFSATMTDELQKVSE---------------------NFLQNPKRIEVNTPSSTA-----ETIEHCF---------- 221 (465)
Q Consensus 178 ~q~i~~SAT~~~~v~~l~~---------------------~~l~~~~~i~v~~~~~~~-----~~i~~~~---------- 221 (465)
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 253 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTL 253 (442)
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHCCCEEEECCHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHCCH
T ss_conf 10467714872448775248774057556733589983378757749999862366287774031555555555431001
Q ss_pred ------CCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf ------11222211024443210122345650677621344322222222223322222345420333234444201355
Q gi|254780382|r 222 ------VATYAQYSKKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGT 295 (465)
Q Consensus 222 ------~~~~~~~~~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~ 295 (465)
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 254 RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 3456777776642899999999987532688669997577999999998626774-246657899889999999987089
Q ss_pred CEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 2388884664644078876500200246778998875210245
Q gi|254780382|r 296 IQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGR 338 (465)
Q Consensus 296 ~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR 338 (465)
T Consensus 333 ~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 333 IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CEEEEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 5299996141266578887579997799879999999616634