HHsearch alignment for GI: 254780382 and conserved domain: COG1198

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=99.94  E-value=1.4e-25  Score=183.94  Aligned_cols=328  Identities=21%  Similarity=0.314  Sum_probs=195.7

Q ss_pred             CCCCHHHHHHHHHCCC----------------------CCCCHHHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHH
Q ss_conf             6988899999997879----------------------87898999999999769----979998279851789999999
Q gi|254780382|r    6 LGLSPKVVCAVLDAGY----------------------VKPTPIQIKTIPLVLQR----HDVCGIAQTGTGKTASFVLPM   59 (465)
Q Consensus         6 l~l~~~l~~~l~~~~~----------------------~~pt~iQ~~~i~~~l~g----~dvi~~apTGsGKT~~~~lp~   59 (465)
T Consensus       159 ~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i  238 (730)
T COG1198         159 AGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAI  238 (730)
T ss_pred             CCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             13038989888765735653036777522346565431103889999999999750566653676777885899999999


Q ss_pred             HHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---C-CHHHHHHCCCCHHHH
Q ss_conf             999860652147827999828589999999998741023332210000122222222222---1-011221022102333
Q gi|254780382|r   60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL---E-RGADVLICTPGRILD  135 (465)
Q Consensus        60 l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l---~-~~~~IiV~TP~rl~~  135 (465)
T Consensus       239 ~~~L~~G------kqvLvLVPEI~Ltpq~~~rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt------  303 (730)
T COG1198         239 AKVLAQG------KQVLVLVPEIALTPQLLARFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT------  303 (730)
T ss_pred             HHHHHCC------CEEEEEECCCCCHHHHHHHHHHH---HCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEE------
T ss_conf             9999759------87999956534569999999998---67874531465792789999999855971599971------


Q ss_pred             HHHCCCC--CCCCCEEECCCCCCCCC---CCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3200000--01210010255100000---001---003578875431022222333432112222111122222100134
Q gi|254780382|r  136 HFNRGKL--LMNNIEILVIDEADRML---DMG---FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV  207 (465)
Q Consensus       136 ~l~~~~~--~l~~~~~lViDEah~l~---~~g---f~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v  207 (465)
T Consensus       304 ---RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA-~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L  377 (730)
T COG1198         304 ---RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA-VLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRL  377 (730)
T ss_pred             ---CHHHCCCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHH-HHHHHHCCCCEEEECCCCC--HHHHHHHHCCCEEEEEC
T ss_conf             ---22330723125769970245643247777776789999-9998860998898268877--89998665385589970


Q ss_pred             CCCCC--CCCCCCCCCCCCCCCCCHH-----HHHHHHCCCCCCCCCEEEEEECCCCCC--------------CCCCCCCC
Q ss_conf             44321--2346421111122221102-----444321012234565067762134432--------------22222222
Q gi|254780382|r  208 NTPSS--TAETIEHCFVATYAQYSKK-----CALLQQLLQSQDTMKNGIIFCNQKKNV--------------VNLCHSLE  266 (465)
Q Consensus       208 ~~~~~--~~~~i~~~~~~~~~~~~~k-----~~~l~~l~~~~~~~~k~iIF~~t~~~~--------------~~l~~~L~  266 (465)
T Consensus       378 ~~R~~~a~~p~v--~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt  455 (730)
T COG1198         378 TNRAGRARLPRV--EIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLT  455 (730)
T ss_pred             CCCCCCCCCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf             354555678762--587356665546775799999999999842986899971677654004256898024899995127


Q ss_pred             C------------------------------------------------CCCCCCCCCCCCCHHH--HHHHHHHHCCCCC
Q ss_conf             2------------------------------------------------3322222345420333--2344442013552
Q gi|254780382|r  267 K------------------------------------------------QGFSVCAIHGNIDQRS--RMKILSNFKEGTI  296 (465)
Q Consensus       267 ~------------------------------------------------~g~~v~~lhg~l~~~~--R~~~~~~F~~g~~  296 (465)
T Consensus       456 ~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~  535 (730)
T COG1198         456 LHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEA  535 (730)
T ss_pred             EECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf             86479806707799989988779899997369964619999999998789994799846666643568999999757998


Q ss_pred             EEEEEHHHHHHHHCCCCCCEEEEECC------CC--CHHH----HHHHHHCCCCCCCCEEEEEEECHHHHHH
Q ss_conf             38888466464407887650020024------67--7899----8875210245888539999778889999
Q gi|254780382|r  297 QLMVASDLAARGLDIPDVGHVFNFDV------PN--RAEN----YIHRIGRTGRAGRHGKAFTLVAKEDIKH  356 (465)
Q Consensus       297 ~vLV~Td~~~~GiDip~v~~VI~~d~------P~--~~~~----y~hR~GR~gR~g~~G~~i~~~~~~d~~~  356 (465)
T Consensus       536 dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~  607 (730)
T COG1198         536 DILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA  607 (730)
T ss_pred             CEEECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH
T ss_conf             866341666427886663189999631431588843578999999999755326788986999967998579