HHsearch alignment for GI: 254780382 and conserved domain: COG1198
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].
Probab=99.94 E-value=1.4e-25 Score=183.94 Aligned_cols=328 Identities=21% Similarity=0.314 Sum_probs=195.7
Q ss_pred CCCCHHHHHHHHHCCC----------------------CCCCHHHHHHHHHHHCC----CCEEEECCCCCCHHHHHHHHH
Q ss_conf 6988899999997879----------------------87898999999999769----979998279851789999999
Q gi|254780382|r 6 LGLSPKVVCAVLDAGY----------------------VKPTPIQIKTIPLVLQR----HDVCGIAQTGTGKTASFVLPM 59 (465)
Q Consensus 6 l~l~~~l~~~l~~~~~----------------------~~pt~iQ~~~i~~~l~g----~dvi~~apTGsGKT~~~~lp~ 59 (465)
T Consensus 159 ~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i 238 (730)
T COG1198 159 AGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAI 238 (730)
T ss_pred CCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 13038989888765735653036777522346565431103889999999999750566653676777885899999999
Q ss_pred HHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---C-CHHHHHHCCCCHHHH
Q ss_conf 999860652147827999828589999999998741023332210000122222222222---1-011221022102333
Q gi|254780382|r 60 LTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL---E-RGADVLICTPGRILD 135 (465)
Q Consensus 60 l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l---~-~~~~IiV~TP~rl~~ 135 (465)
T Consensus 239 ~~~L~~G------kqvLvLVPEI~Ltpq~~~rf~~r---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt------ 303 (730)
T COG1198 239 AKVLAQG------KQVLVLVPEIALTPQLLARFKAR---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT------ 303 (730)
T ss_pred HHHHHCC------CEEEEEECCCCCHHHHHHHHHHH---HCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEE------
T ss_conf 9999759------87999956534569999999998---67874531465792789999999855971599971------
Q ss_pred HHHCCCC--CCCCCEEECCCCCCCCC---CCC---CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3200000--01210010255100000---001---003578875431022222333432112222111122222100134
Q gi|254780382|r 136 HFNRGKL--LMNNIEILVIDEADRML---DMG---FIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEV 207 (465)
Q Consensus 136 ~l~~~~~--~l~~~~~lViDEah~l~---~~g---f~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v 207 (465)
T Consensus 304 ---RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA-~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L 377 (730)
T COG1198 304 ---RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA-VLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRL 377 (730)
T ss_pred ---CHHHCCCHHHCCEEEEECCCCCCCCCCCCCCCCHHHHH-HHHHHHCCCCEEEECCCCC--HHHHHHHHCCCEEEEEC
T ss_conf ---22330723125769970245643247777776789999-9998860998898268877--89998665385589970
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCHH-----HHHHHHCCCCCCCCCEEEEEECCCCCC--------------CCCCCCCC
Q ss_conf 44321--2346421111122221102-----444321012234565067762134432--------------22222222
Q gi|254780382|r 208 NTPSS--TAETIEHCFVATYAQYSKK-----CALLQQLLQSQDTMKNGIIFCNQKKNV--------------VNLCHSLE 266 (465)
Q Consensus 208 ~~~~~--~~~~i~~~~~~~~~~~~~k-----~~~l~~l~~~~~~~~k~iIF~~t~~~~--------------~~l~~~L~ 266 (465)
T Consensus 378 ~~R~~~a~~p~v--~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt 455 (730)
T COG1198 378 TNRAGRARLPRV--EIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLT 455 (730)
T ss_pred CCCCCCCCCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEE
T ss_conf 354555678762--587356665546775799999999999842986899971677654004256898024899995127
Q ss_pred C------------------------------------------------CCCCCCCCCCCCCHHH--HHHHHHHHCCCCC
Q ss_conf 2------------------------------------------------3322222345420333--2344442013552
Q gi|254780382|r 267 K------------------------------------------------QGFSVCAIHGNIDQRS--RMKILSNFKEGTI 296 (465)
Q Consensus 267 ~------------------------------------------------~g~~v~~lhg~l~~~~--R~~~~~~F~~g~~ 296 (465)
T Consensus 456 ~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~ 535 (730)
T COG1198 456 LHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEA 535 (730)
T ss_pred EECCCCEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 86479806707799989988779899997369964619999999998789994799846666643568999999757998
Q ss_pred EEEEEHHHHHHHHCCCCCCEEEEECC------CC--CHHH----HHHHHHCCCCCCCCEEEEEEECHHHHHH
Q ss_conf 38888466464407887650020024------67--7899----8875210245888539999778889999
Q gi|254780382|r 297 QLMVASDLAARGLDIPDVGHVFNFDV------PN--RAEN----YIHRIGRTGRAGRHGKAFTLVAKEDIKH 356 (465)
Q Consensus 297 ~vLV~Td~~~~GiDip~v~~VI~~d~------P~--~~~~----y~hR~GR~gR~g~~G~~i~~~~~~d~~~ 356 (465)
T Consensus 536 dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRAsEr~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 536 DILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred CEEECCHHHHCCCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH
T ss_conf 866341666427886663189999631431588843578999999999755326788986999967998579