HHsearch alignment for GI: 254780382 and conserved domain: COG1201
>COG1201 Lhr Lhr-like helicases [General function prediction only].
Probab=100.00 E-value=0 Score=380.40 Aligned_cols=360 Identities=23% Similarity=0.364 Sum_probs=272.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC--CCCCCCCEEEEECCCHHHH
Q ss_conf 88899999997879878989999999997699799982798517899999999998606--5214782799982858999
Q gi|254780382|r 8 LSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKG--RARVRMPRTLILEPTRELA 85 (465)
Q Consensus 8 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~--~~~~~~~~~lil~PtreLa 85 (465)
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred CCHHHHHHHHHH-CCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHH
T ss_conf 489999999985-0899878999999985898469986899973799999999999860688888856999957078887
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCC--CCCCCEEECCCCCCCCCC--C
Q ss_conf 999999874102333221000012222222222210112210221023333200000--012100102551000000--0
Q gi|254780382|r 86 AQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKL--LMNNIEILVIDEADRMLD--M 161 (465)
Q Consensus 86 ~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~--~l~~~~~lViDEah~l~~--~ 161 (465)
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHCCCCCCCEEEECHHHHHHHHCCHHHHHHHCCCCEEEEEHHHHHHCCCC
T ss_conf 89999999999975984444228788677630469999689958348999836888999860780999512545434565
Q ss_pred CC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCC-CCCCCCCCCCCCCCCCCCCCC-------CCC
Q ss_conf 10--03578875431022222333432112222111122222--1001-344432123464211111222-------211
Q gi|254780382|r 162 GF--IPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQN--PKRI-EVNTPSSTAETIEHCFVATYA-------QYS 229 (465)
Q Consensus 162 gf--~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~--~~~i-~v~~~~~~~~~i~~~~~~~~~-------~~~ 229 (465)
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~-~~k---~~~i~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVS-AAK---KLEIKVISPVEDLIYDEELWA 240 (814)
T ss_pred CHHHHHHHHHHHHHCC-CCEEEEEHHCCCCH-HHHHHHHCCCCCCEEEEECC-CCC---CCEEEEEECCCCCCCCCCHHH
T ss_conf 3134332999985175-53797540215888-99999854789842999745-677---531799804775000262467
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHH
Q ss_conf 0244432101223456506776213443222222222233-222223454203332344442013552388884664644
Q gi|254780382|r 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQG-FSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARG 308 (465)
Q Consensus 230 ~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g-~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~G 308 (465)
T Consensus 241 ~~~~~i~~~v~---~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELG 317 (814)
T COG1201 241 ALYERIAELVK---KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELG 317 (814)
T ss_pred HHHHHHHHHHH---HCCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHC
T ss_conf 89999999996---168589997272789999999987268755653166657789999999866886299980642205
Q ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHCCCC-CCCCEEEEEEECH-HHHHHHHHH-HHHHCCCCCCCCCCHHH
Q ss_conf 078876500200246778998875210245-8885399997788-899999999-99962312304463665
Q gi|254780382|r 309 LDIPDVGHVFNFDVPNRAENYIHRIGRTGR-AGRHGKAFTLVAK-EDIKHIDAI-EKLIEKKVDWLNGDLSS 377 (465)
Q Consensus 309 iDip~v~~VI~~d~P~~~~~y~hR~GR~gR-~g~~G~~i~~~~~-~d~~~~~~i-~~~~~~~~~~~~~~~~~ 377 (465)
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~ 389 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNP 389 (814)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 024774299981793888888685031466568864279981679999999999999971876667788763