HHsearch alignment for GI: 254780382 and conserved domain: COG1435
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism].
Probab=90.38 E-value=1 Score=23.52 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=43.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97999827985178999999999986065214782799982858999999999874102333221000012222222222
Q gi|254780382|r 39 HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKK 118 (465)
Q Consensus 39 ~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~ 118 (465)
T Consensus 5 ~l~~i~gpM~SGKT~e----Ll~r~~~--~~~~g~~v~vfkp~iD------~R---~~~~---~V~Sr~-G~~~------ 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEE----LLRRARR--YKEAGMKVLVFKPAID------TR---YGVG---KVSSRI-GLSS------ 59 (201)
T ss_pred EEEEEECCCCCCCHHH----HHHHHHH--HHHCCCEEEEEECCCC------CC---CCCC---EEEECC-CCCC------
T ss_conf 8999971576863599----9999999--9975980899852533------53---5643---365315-8766------
Q ss_pred CCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf 210112210221023333200000012100102551000
Q gi|254780382|r 119 LERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157 (465)
Q Consensus 119 l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~ 157 (465)
T Consensus 60 ----~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF 93 (201)
T COG1435 60 ----EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQF 93 (201)
T ss_pred ----CCEECCCHHHHHHHHHHCCCCCC-CCEEEEEHHHH
T ss_conf ----53563875789999985134787-57899961671