HHsearch alignment for GI: 254780382 and conserved domain: COG4581

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=100.00  E-value=5.7e-33  Score=231.59  Aligned_cols=317  Identities=20%  Similarity=0.292  Sum_probs=216.8

Q ss_pred             HHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHH-H
Q ss_conf             997879878989999999997699799982798517899999999998606521478279998285899999999987-4
Q gi|254780382|r   16 VLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFE-K   94 (465)
Q Consensus        16 l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~-~   94 (465)
T Consensus       113 ~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~------~~qrviYTsPIKALsNQKyrdl~~~  185 (1041)
T COG4581         113 AREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR------DGQRVIYTSPIKALSNQKYRDLLAK  185 (1041)
T ss_pred             HHHCCCC-CCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH------CCCCEEECCCHHHHHHHHHHHHHHH
T ss_conf             8748989-67899999999847995799733789855599999999987------1894486163066420679999998


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             10233322100001222222222221011221022102333320000001210010255100000001003578875431
Q gi|254780382|r   95 YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV  174 (465)
Q Consensus        95 ~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~  174 (465)
T Consensus       186 fgdv-~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l  257 (1041)
T COG4581         186 FGDV-ADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL  257 (1041)
T ss_pred             HHHH-HHHCCCEECCEEEC-------CCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHC
T ss_conf             6005-65404010543427-------999668860999999862586101353068887666504632212578999866


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC------CCCC-----------------
Q ss_conf             022222333432112222111122---22210013444321234642111112------2221-----------------
Q gi|254780382|r  175 PFTRQTLLFSATMTDELQKVSENF---LQNPKRIEVNTPSSTAETIEHCFVAT------YAQY-----------------  228 (465)
Q Consensus       175 ~~~~q~i~~SAT~~~~v~~l~~~~---l~~~~~i~v~~~~~~~~~i~~~~~~~------~~~~-----------------  228 (465)
T Consensus       258 P~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~-t~~RpvP-L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~  334 (1041)
T COG4581         258 PDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVS-TEHRPVP-LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC  334 (1041)
T ss_pred             CCCCCEEEEECCCCCH-HHHHHHHHHCCCCCEEEEE-ECCCCCC-EEEEEECCCCEEEEECCCCCCHHHCCHHHHHHHHC
T ss_conf             7777689996788987-9999999740378748995-0688897-17988658751453545653011134334334302


Q ss_pred             --------C----------------------HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCC----------
Q ss_conf             --------1----------------------024443210122345650677621344322222222223----------
Q gi|254780382|r  229 --------S----------------------KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQ----------  268 (465)
Q Consensus       229 --------~----------------------~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~----------  268 (465)
T Consensus       335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~  412 (1041)
T COG4581         335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER  412 (1041)
T ss_pred             CCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf             200013567654321233334567766565530577766544--037852899973651899998750364215882788


Q ss_pred             ------------------CC-------------CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEE
Q ss_conf             ------------------32-------------22223454203332344442013552388884664644078876500
Q gi|254780382|r  269 ------------------GF-------------SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHV  317 (465)
Q Consensus       269 ------------------g~-------------~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~V  317 (465)
T Consensus       413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv  492 (1041)
T COG4581         413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVV  492 (1041)
T ss_pred             HHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCCCCCEE
T ss_conf             89999999985347202127500999999876034540245036899999999860430577533346401578400135


Q ss_pred             E----EEC----CCCCHHHHHHHHHCCCCCCC--CEEEEEEECHH
Q ss_conf             2----002----46778998875210245888--53999977888
Q gi|254780382|r  318 F----NFD----VPNRAENYIHRIGRTGRAGR--HGKAFTLVAKE  352 (465)
Q Consensus       318 I----~~d----~P~~~~~y~hR~GR~gR~g~--~G~~i~~~~~~  352 (465)
T Consensus       493 ~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~  537 (1041)
T COG4581         493 FTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF  537 (1041)
T ss_pred             EEEEEEECCCCEEECCHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf             465577548853565815777754443015565465499955788