HHsearch alignment for GI: 254780382 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=91.85 E-value=0.12 Score=29.61 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=31.0
Q ss_pred EEEEEECCCCCCCCCCCCCC----CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHH-----HHHHH-HCCCCCCE
Q ss_conf 06776213443222222222----2332222234542033323444420135523888846-----64644-07887650
Q gi|254780382|r 247 NGIIFCNQKKNVVNLCHSLE----KQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASD-----LAARG-LDIPDVGH 316 (465)
Q Consensus 247 k~iIF~~t~~~~~~l~~~L~----~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td-----~~~~G-iDip~v~~ 316 (465)
T Consensus 161 ~aLIL~PTRELa~QI~~~~~~L~~~~~l~v~~~~GG~~~~~q---~~~l~~~~~dIvVaTPGRL~~l~~~~~~~l~~v~~ 237 (472)
T PRK01297 161 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 237 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH---HHHHHCCCCCEEEECHHHHHHHHCCCCEECCCCEE
T ss_conf 299987999999999999999746279769999789887999---99985589988997979999874348254255229
Q ss_pred EE
Q ss_conf 02
Q gi|254780382|r 317 VF 318 (465)
Q Consensus 317 VI 318 (465)
T Consensus 238 lV 239 (472)
T PRK01297 238 MV 239 (472)
T ss_pred EE
T ss_conf 99