HHsearch alignment for GI: 254780382 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00  E-value=0  Score=676.13  Aligned_cols=372  Identities=38%  Similarity=0.623  Sum_probs=343.8

Q ss_pred             CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC----CCCCCCEEEE
Q ss_conf             843669888999999978798789899999999976997999827985178999999999986065----2147827999
Q gi|254780382|r    2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR----ARVRMPRTLI   77 (465)
Q Consensus         2 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~----~~~~~~~~li   77 (465)
T Consensus        10 ~F~~lgL~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLI   89 (423)
T PRK04837         10 KFSDFALHPKVVEALEKKGFEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALI   89 (423)
T ss_pred             CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf             48247969999999997799999999999999996799889989998749999999999999837453345567861899


Q ss_pred             ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf             82858999999999874102333221000012222222222210112210221023333200000012100102551000
Q gi|254780382|r   78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR  157 (465)
Q Consensus        78 l~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~  157 (465)
T Consensus        90 L~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD~  169 (423)
T PRK04837         90 MAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR  169 (423)
T ss_pred             EECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHH
T ss_conf             93889999999999999743258459999899887999998717999899891899999864221236642899634465


Q ss_pred             CCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             0000100357887543102--22223334321122221111222221001344432123464211111222211024443
Q gi|254780382|r  158 MLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL  235 (465)
Q Consensus       158 l~~~gf~~~i~~i~~~~~~--~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l  235 (465)
T Consensus       170 lld~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~--~~~~K~~~L  247 (423)
T PRK04837        170 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP--SNEEKMRLL  247 (423)
T ss_pred             HHHCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEE--CHHHHHHHH
T ss_conf             430263999999999689622108999703688899999999778987999657765665426999991--727799999


Q ss_pred             HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCC
Q ss_conf             21012234565067762134432222222222332222234542033323444420135523888846646440788765
Q gi|254780382|r  236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG  315 (465)
Q Consensus       236 ~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~  315 (465)
T Consensus       248 ~~ll~~~-~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~~V~  326 (423)
T PRK04837        248 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIPDVT  326 (423)
T ss_pred             HHHHHHH-CCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCC
T ss_conf             9999840-887468861628889999999976598178722545799999999999769998998700432777726798


Q ss_pred             EEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf             0020024677899887521024588853999977888999999999996231230446366
Q gi|254780382|r  316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS  376 (465)
Q Consensus       316 ~VI~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~  376 (465)
T Consensus       327 ~VInyD~P~~~~~YiHRiGRTgRaG~~G~aitf~~~~~~~~l~~ie~~~~~~i~~~~~~~~  387 (423)
T PRK04837        327 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYALNLPAIETYIGHSIPVSKYDSD  387 (423)
T ss_pred             EEEEECCCCCHHHEECCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf             8999699897455100465412789946899987399999999999996896750136842