HHsearch alignment for GI: 254780382 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=100.00 E-value=0 Score=676.13 Aligned_cols=372 Identities=38% Similarity=0.623 Sum_probs=343.8
Q ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC----CCCCCCEEEE
Q ss_conf 843669888999999978798789899999999976997999827985178999999999986065----2147827999
Q gi|254780382|r 2 DFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR----ARVRMPRTLI 77 (465)
Q Consensus 2 ~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~----~~~~~~~~li 77 (465)
T Consensus 10 ~F~~lgL~~~ll~~L~~~g~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLI 89 (423)
T PRK04837 10 KFSDFALHPKVVEALEKKGFEYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALI 89 (423)
T ss_pred CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 48247969999999997799999999999999996799889989998749999999999999837453345567861899
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf 82858999999999874102333221000012222222222210112210221023333200000012100102551000
Q gi|254780382|r 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADR 157 (465)
Q Consensus 78 l~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~ 157 (465)
T Consensus 90 L~PTRELa~Qi~~~~~~l~~~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL~d~~~~~~~~l~~i~~lVlDEAD~ 169 (423)
T PRK04837 90 MAPTRELAVQIHADAEPLAQATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADR 169 (423)
T ss_pred EECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHH
T ss_conf 93889999999999999743258459999899887999998717999899891899999864221236642899634465
Q ss_pred CCCCCCHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 0000100357887543102--22223334321122221111222221001344432123464211111222211024443
Q gi|254780382|r 158 MLDMGFIPYIQNITSLVPF--TRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALL 235 (465)
Q Consensus 158 l~~~gf~~~i~~i~~~~~~--~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l 235 (465)
T Consensus 170 lld~gF~~~i~~i~~~~p~~~~r~~~lfSATl~~~v~~la~~~l~~p~~i~v~~~~~~~~~i~~~~~~~--~~~~K~~~L 247 (423)
T PRK04837 170 MFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP--SNEEKMRLL 247 (423)
T ss_pred HHHCCCHHHHHHHHHHCCCCHHEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEEEE--CHHHHHHHH
T ss_conf 430263999999999689622108999703688899999999778987999657765665426999991--727799999
Q ss_pred HHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCC
Q ss_conf 21012234565067762134432222222222332222234542033323444420135523888846646440788765
Q gi|254780382|r 236 QQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVG 315 (465)
Q Consensus 236 ~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~ 315 (465)
T Consensus 248 ~~ll~~~-~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~~V~ 326 (423)
T PRK04837 248 QTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIPDVT 326 (423)
T ss_pred HHHHHHH-CCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCCC
T ss_conf 9999840-887468861628889999999976598178722545799999999999769998998700432777726798
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 0020024677899887521024588853999977888999999999996231230446366
Q gi|254780382|r 316 HVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDLS 376 (465)
Q Consensus 316 ~VI~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~ 376 (465)
T Consensus 327 ~VInyD~P~~~~~YiHRiGRTgRaG~~G~aitf~~~~~~~~l~~ie~~~~~~i~~~~~~~~ 387 (423)
T PRK04837 327 HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEYALNLPAIETYIGHSIPVSKYDSD 387 (423)
T ss_pred EEEEECCCCCHHHEECCCCHHHCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEECCCCC
T ss_conf 8999699897455100465412789946899987399999999999996896750136842