HHsearch alignment for GI: 254780382 and conserved domain: PRK08769

>PRK08769 DNA polymerase III subunit delta'; Validated.
Probab=96.96  E-value=0.0041  Score=38.96  Aligned_cols=141  Identities=14%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             CCCCHHHHHHHHHHH----CCC---CEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf             878989999999997----699---7999827985178999999999986065214782799982858999999999874
Q gi|254780382|r   22 VKPTPIQIKTIPLVL----QRH---DVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEK   94 (465)
Q Consensus        22 ~~pt~iQ~~~i~~~l----~g~---dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~   94 (465)
T Consensus         3 ~~~~PWq~~~~~~L~~~i~~~rl~HA~Lf~Gp~G~GK~~~-A~~~A~~llc~~~~~~~--~---~~-------~~-~~i~   68 (319)
T PRK08769          3 SAFSPWQQRAFDQTVAALDAGRLGHGLLICGPEGLGKRAV-ALALAEHVLASGPDPAL--A---QR-------TR-QLIA   68 (319)
T ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHH-HHHHHHHHHCCCCCCCC--C---CH-------HH-HHHH
T ss_conf             5558776899999999997699420687589998789999-99999998379979765--4---33-------88-9996


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             10233322100001222222222221011221022102333320000001210010255100000001003578875431
Q gi|254780382|r   95 YGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRMLDMGFIPYIQNITSLV  174 (465)
Q Consensus        95 ~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~~~gf~~~i~~i~~~~  174 (465)
T Consensus        69 ~g~HPD~~~i~~~~~~----~~~k~k--~~I~IdqiR~l~~~~~~~p-~~g~~KV~IId~Ad~mn~~A-aNalLK~LEEP  140 (319)
T PRK08769         69 AGTHPDLQLVSFIPNR----TGDKLR--TEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRSA-CNALLKTLEEP  140 (319)
T ss_pred             CCCCCCEEEEECCCCC----CCCCCC--CCCCHHHHHHHHHHHHHCC-CCCCCEEEEECCHHHCCHHH-HHHHHHHHCCC
T ss_conf             6899896877534444----543112--3486999999999961372-02795699980667528999-99999982279


Q ss_pred             CCCCCCCCCC
Q ss_conf             0222223334
Q gi|254780382|r  175 PFTRQTLLFS  184 (465)
Q Consensus       175 ~~~~q~i~~S  184 (465)
T Consensus       141 p~~~~~iL~~  150 (319)
T PRK08769        141 SPGRYLWLIS  150 (319)
T ss_pred             CCCEEEEEEE
T ss_conf             9884899986