HHsearch alignment for GI: 254780382 and conserved domain: PRK11057
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional.
Probab=100.00 E-value=0 Score=418.99 Aligned_cols=335 Identities=24% Similarity=0.373 Sum_probs=258.7
Q ss_pred HHCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH
Q ss_conf 3669888999999978-798789899999999976997999827985178999999999986065214782799982858
Q gi|254780382|r 4 ADLGLSPKVVCAVLDA-GYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTR 82 (465)
Q Consensus 4 ~~l~l~~~l~~~l~~~-~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~Ptr 82 (465)
T Consensus 5 ~~~~~~~~a~~~L~~~FG~~~Fr~~Q~e~i~~~l~g~D~l~~mpTG~GKSlcyQlPal~~--------~-g~tiVisPLi 75 (607)
T PRK11057 5 EVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALVL--------D-GLTLVVSPLI 75 (607)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC--------C-CCEEEECCHH
T ss_conf 886167799999998669843457699999999869988998789955979999999877--------9-9889986879
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CC-HHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCC
Q ss_conf 9999999998741023332210000122222222222---10-1122102210233332000000121001025510000
Q gi|254780382|r 83 ELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQNKKL---ER-GADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRM 158 (465)
Q Consensus 83 eLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~~~l---~~-~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l 158 (465)
T Consensus 76 sLm~DQv~~L~~----~gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l~~~~i~~~viDEAHcv 151 (607)
T PRK11057 76 SLMKDQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPVLLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf 999999999997----8992999569999999999999997599879998855856978999997188664885306667
Q ss_pred CCCC--CHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 0001--00357887---5431022222333432112222111122--222100134443212346421111122221102
Q gi|254780382|r 159 LDMG--FIPYIQNI---TSLVPFTRQTLLFSATMTDELQKVSENF--LQNPKRIEVNTPSSTAETIEHCFVATYAQYSKK 231 (465)
Q Consensus 159 ~~~g--f~~~i~~i---~~~~~~~~q~i~~SAT~~~~v~~l~~~~--l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k 231 (465)
T Consensus 152 s~WGhdFRp~Y~~l~~l~~~~~-~~p~~AlTATAt~~v~~di~~~L~l~~~~~~-~~~f~--RpNl~~~v~---~~~~~- 223 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD--RPNIRYMLM---EKFKP- 223 (607)
T ss_pred HHCCCCCHHHHHHHHHHHHHCC-CCCEEEEEECCCHHHHHHHHHHHCCCCCCEE-ECCCC--CCCCEEEEE---ECCCH-
T ss_conf 5415500388999999999769-9974899963687899999997089998078-25778--887414555---44773-
Q ss_pred HHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCC
Q ss_conf 44432101223456506776213443222222222233222223454203332344442013552388884664644078
Q gi|254780382|r 232 CALLQQLLQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDI 311 (465)
Q Consensus 232 ~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDi 311 (465)
T Consensus 224 ~~~~~~~~~~~-~~~sgIIYc~trk~~e~la~~L~~~G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk 302 (607)
T PRK11057 224 LDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred HHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCC
T ss_conf 99999998706-89977999692899999999998579754530589997899999998756887589975011057677
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHH
Q ss_conf 8765002002467789988752102458885399997788899999999
Q gi|254780382|r 312 PDVGHVFNFDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAI 360 (465)
Q Consensus 312 p~v~~VI~~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i 360 (465)
T Consensus 303 ~dVR~ViH~~~P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~D~~~~~~~ 351 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf 7766799778999999999988635258985418998568789999999