HHsearch alignment for GI: 254780382 and conserved domain: PRK11634

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=100.00  E-value=0  Score=684.28  Aligned_cols=369  Identities=37%  Similarity=0.699  Sum_probs=344.1

Q ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECC
Q ss_conf             98436698889999999787987898999999999769979998279851789999999999860652147827999828
Q gi|254780382|r    1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEP   80 (465)
Q Consensus         1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~P   80 (465)
T Consensus         6 ~sF~~lgL~~~ll~aL~~~Gf~~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~---~~~pqaLIL~P   82 (629)
T PRK11634          6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE---LKAPQILVLAP   82 (629)
T ss_pred             CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHC---CCCCCEEEECC
T ss_conf             987767989999999998799999999999999996799889978884789999999999986623---68986899789


Q ss_pred             CHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCCCCCEEECCCCCCCCC
Q ss_conf             5899999999987410233-322100001222222222221011221022102333320000001210010255100000
Q gi|254780382|r   81 TRELAAQVADNFEKYGKNY-NLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFNRGKLLMNNIEILVIDEADRML  159 (465)
Q Consensus        81 treLa~Qi~~~~~~~~~~~-~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~~~~~~l~~~~~lViDEah~l~  159 (465)
T Consensus        83 TRELA~QV~~~~~~l~~~~~~i~v~~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD~mL  162 (629)
T PRK11634         83 TRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEML  162 (629)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHHHHC
T ss_conf             98999999999999972179977999989977899999862799999969899999997296412007678986715533


Q ss_pred             CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
Q ss_conf             00100357887543102222233343211222211112222210013444321234642111112222110244432101
Q gi|254780382|r  160 DMGFIPYIQNITSLVPFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQYSKKCALLQQLL  239 (465)
Q Consensus       160 ~~gf~~~i~~i~~~~~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~~~k~~~l~~l~  239 (465)
T Consensus       163 ~~gF~~di~~Il~~lp~~~Qt~LfSATmp~~i~~la~~~l~~P~~i~i~~~~~t~~~i~q~~~~v~~--~~K~~aL~~~L  240 (629)
T PRK11634        163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG--MRKNEALVRFL  240 (629)
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEEECC--HHHHHHHHHHH
T ss_conf             6365999999998674031446663146599999999875698797404555557763059999652--45799999998


Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEEE
Q ss_conf             22345650677621344322222222223322222345420333234444201355238888466464407887650020
Q gi|254780382|r  240 QSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFSVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVFN  319 (465)
Q Consensus       240 ~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI~  319 (465)
T Consensus       241 ~~~-~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaTDvaARGLDi~~V~~VIN  319 (629)
T PRK11634        241 EAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN  319 (629)
T ss_pred             HHC-CCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEE
T ss_conf             615-8884899982278899999999976996576568999999999999997599988987862105577256888999


Q ss_pred             ECCCCCHHHHHHHHHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             02467789988752102458885399997788899999999999623123044636
Q gi|254780382|r  320 FDVPNRAENYIHRIGRTGRAGRHGKAFTLVAKEDIKHIDAIEKLIEKKVDWLNGDL  375 (465)
Q Consensus       320 ~d~P~~~~~y~hR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~~~~~~~~~~  375 (465)
T Consensus       320 yDlP~d~e~YVHRiGRTGRaGr~G~Aitfv~~~e~~~l~~ier~~~~~~~~~~~p~  375 (629)
T PRK11634        320 YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN  375 (629)
T ss_pred             ECCCCCHHHCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf             68989743401025833168996469998888999999999999779860148969