HHsearch alignment for GI: 254780382 and conserved domain: PRK13897
>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=96.46 E-value=0.0015 Score=41.82 Aligned_cols=51 Identities=25% Similarity=0.242 Sum_probs=38.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf 97999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r 39 HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK 97 (465)
Q Consensus 39 ~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~ 97 (465)
T Consensus 158 eHvLliAPTrSGKGvG~VIPNLL--~w~-~-----S~VV~DpKGEn~~~Tag~R~k~G~ 208 (628)
T PRK13897 158 QHALLFAPTGSGKGVGFVIPNLL--FWE-D-----SVVVHDIKLENYELTSGWREKQGQ 208 (628)
T ss_pred CEEEEECCCCCCCCCEEECCCCC--CCC-C-----CEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 36999788999887279831215--799-9-----889997767799999999998799