HHsearch alignment for GI: 254780382 and conserved domain: PRK13897

>PRK13897 type IV secretion system component VirD4; Provisional.
Probab=96.46  E-value=0.0015  Score=41.82  Aligned_cols=51  Identities=25%  Similarity=0.242  Sum_probs=38.1

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC
Q ss_conf             97999827985178999999999986065214782799982858999999999874102
Q gi|254780382|r   39 HDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLILEPTRELAAQVADNFEKYGK   97 (465)
Q Consensus        39 ~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~~~~   97 (465)
T Consensus       158 eHvLliAPTrSGKGvG~VIPNLL--~w~-~-----S~VV~DpKGEn~~~Tag~R~k~G~  208 (628)
T PRK13897        158 QHALLFAPTGSGKGVGFVIPNLL--FWE-D-----SVVVHDIKLENYELTSGWREKQGQ  208 (628)
T ss_pred             CEEEEECCCCCCCCCEEECCCCC--CCC-C-----CEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             36999788999887279831215--799-9-----889997767799999999998799