HHsearch alignment for GI: 254780382 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=100.00 E-value=3.5e-39 Score=271.71 Aligned_cols=323 Identities=18% Similarity=0.297 Sum_probs=229.2
Q ss_pred CCCH-H-HHHHHH-HCCCCCCCHHHHHHHHHHHC------CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEE
Q ss_conf 9888-9-999999-78798789899999999976------9979998279851789999999999860652147827999
Q gi|254780382|r 7 GLSP-K-VVCAVL-DAGYVKPTPIQIKTIPLVLQ------RHDVCGIAQTGTGKTASFVLPMLTILEKGRARVRMPRTLI 77 (465)
Q Consensus 7 ~l~~-~-l~~~l~-~~~~~~pt~iQ~~~i~~~l~------g~dvi~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~li 77 (465)
T Consensus 289 ~~~~~~~l~k~~~~~LPF~-LT~aQ~r~v~EI~~DL~~~~pMnRLlQGDVGSGKT~VA~la~l~~i~~GY------Q~AL 361 (721)
T TIGR00643 289 NVSENELLEKFLAKSLPFE-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIESGY------QVAL 361 (721)
T ss_pred EECHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------EEEE
T ss_conf 0020579999998528887-76778999999998614787532221101066389999999999984698------0999
Q ss_pred ECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCH-HHHHHCCCCHHHHHHHCCCCCCCCCEEECCC
Q ss_conf 828589999999998741023332210000122222222---222101-1221022102333320000001210010255
Q gi|254780382|r 78 LEPTRELAAQVADNFEKYGKNYNLTVALLIGGIPFEAQN---KKLERG-ADVLICTPGRILDHFNRGKLLMNNIEILVID 153 (465)
Q Consensus 78 l~PtreLa~Qi~~~~~~~~~~~~l~~~~~~gg~~~~~~~---~~l~~~-~~IiV~TP~rl~~~l~~~~~~l~~~~~lViD 153 (465)
T Consensus 362 MAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i~~G~~~~~vGT-----HALiqe~vef~~L~lVIiD 436 (721)
T TIGR00643 362 MAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETIASGEIHLVVGT-----HALIQEKVEFKRLGLVIID 436 (721)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEHH-----HHHHHHHHHHHCCCEEEEE
T ss_conf 17768999999999999623548578886156678789999999863952057331-----3554521443147748993
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
Q ss_conf 100000001003578875431---022222333432112222111122222100134443212346421111122221-1
Q gi|254780382|r 154 EADRMLDMGFIPYIQNITSLV---PFTRQTLLFSATMTDELQKVSENFLQNPKRIEVNTPSSTAETIEHCFVATYAQY-S 229 (465)
Q Consensus 154 Eah~l~~~gf~~~i~~i~~~~---~~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~v~~~~~~~~~i~~~~~~~~~~~-~ 229 (465)
T Consensus 437 EQHR-FGV~QR~~L~~KG~~~~~~G~~PH~L~MtATPIPRTLALt--~yGDld~S~I~elP~GR~pi~T~~~~~-~~~~a 512 (721)
T TIGR00643 437 EQHR-FGVEQRKKLREKGQEGSMIGFAPHVLVMTATPIPRTLALT--VYGDLDVSIIDELPPGRKPITTYLIKH-KEKGA 512 (721)
T ss_pred CCCC-CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHH--HHHCCEEEEECCCCCCCCEEEEEEEEC-CCCCC
T ss_conf 2335-6078999999862206886777776466378814789977--650000334316854593389988842-78877
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC-C--------CCCCC---CCCCCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 02444321012234565067762134432222-2--------22222---332222234542033323444420135523
Q gi|254780382|r 230 KKCALLQQLLQSQDTMKNGIIFCNQKKNVVNL-C--------HSLEK---QGFSVCAIHGNIDQRSRMKILSNFKEGTIQ 297 (465)
Q Consensus 230 ~k~~~l~~l~~~~~~~~k~iIF~~t~~~~~~l-~--------~~L~~---~g~~v~~lhg~l~~~~R~~~~~~F~~g~~~ 297 (465)
T Consensus 513 W~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F~~~~~~ 592 (721)
T TIGR00643 513 WIDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEFREGEVD 592 (721)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCE
T ss_conf 56899999999983289089996440320047168999999999888612210011330689847899999985215836
Q ss_pred EEEEHHHHHHHHCCCCCCEEEEECCCCCHHHH----HHHH-HCCCCCCCCEEEEEEE
Q ss_conf 88884664644078876500200246778998----8752-1024588853999977
Q gi|254780382|r 298 LMVASDLAARGLDIPDVGHVFNFDVPNRAENY----IHRI-GRTGRAGRHGKAFTLV 349 (465)
Q Consensus 298 vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y----~hR~-GR~gR~g~~G~~i~~~ 349 (465)
T Consensus 593 ILVsTTVIEVGVDVPnAtvMVIe~----AeRFGLSQLHQLRGRVGRG~~~SyC~L~~ 645 (721)
T TIGR00643 593 ILVSTTVIEVGVDVPNATVMVIED----AERFGLSQLHQLRGRVGRGDHQSYCLLVY 645 (721)
T ss_pred EEEEEEEEEEEEECCCCCEEEEEC----CCHHHHHHHHHHCEEECCCCCCCEEEEEC
T ss_conf 999976899986179772788866----55103688876350012689750799812