HHsearch alignment for GI: 254780382 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=95.83 E-value=0.04 Score=32.61 Aligned_cols=31 Identities=29% Similarity=0.315 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 878989999999997699799982798517899
Q gi|254780382|r 22 VKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTAS 54 (465)
Q Consensus 22 ~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~ 54 (465)
T Consensus 2 ~~LNp~Q~~AV~Y~~G--PlLVLAGAGSGKT~V 32 (677)
T TIGR01074 2 SKLNPQQQEAVEYVGG--PLLVLAGAGSGKTRV 32 (677)
T ss_pred CCCCHHHHHHHHHHCC--CCEEECCCCCCCCHH
T ss_conf 8887437999986158--714651777786357