HHsearch alignment for GI: 254780382 and conserved domain: TIGR01407

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=99.71  E-value=5.5e-16  Score=122.03  Aligned_cols=121  Identities=17%  Similarity=0.255  Sum_probs=82.0

Q ss_pred             CCEEEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE----
Q ss_conf             65067762134432222222222332--222234542033323444420135523888846646440788765002----
Q gi|254780382|r  245 MKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF----  318 (465)
Q Consensus       245 ~~k~iIF~~t~~~~~~l~~~L~~~g~--~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI----  318 (465)
T Consensus       765 ~~~~LVLFTS~~mL~~V~~~l~~l~~~~~~~~LaQ~~nsGs~~ki~K~F~~ge~~ILLG~~SFWEGvDf~~~~~~~lvi~  844 (944)
T TIGR01407       765 SPKILVLFTSKEMLKAVYDLLKELSEEEGLEVLAQGINSGSRAKIKKRFEKGEKAILLGASSFWEGVDFPGNELVILVIP  844 (944)
T ss_pred             CCCEEEEHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCCEEEEEE
T ss_conf             89627516489999999998530200258066741267785789999861478756611554002401179971799985


Q ss_pred             ----------------------------EECCCCCHHHHHHHHHCCCCCCC-CEEEEEEECHH--HHHHHHHHHHHHCC
Q ss_conf             ----------------------------00246778998875210245888-53999977888--99999999999623
Q gi|254780382|r  319 ----------------------------NFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKE--DIKHIDAIEKLIEK  366 (465)
Q Consensus       319 ----------------------------~~d~P~~~~~y~hR~GR~gR~g~-~G~~i~~~~~~--d~~~~~~i~~~~~~  366 (465)
T Consensus       845 RLPF~nP~~pL~kk~~~~~~~EG~npF~~~~lP~A~~RlrQalGRliR~e~drg~~~-~LD~Rl~~~~Ygk~~~~~L~~  922 (944)
T TIGR01407       845 RLPFANPKEPLTKKKLQKLEEEGKNPFYDYALPMAILRLRQALGRLIRRENDRGSIL-VLDKRLVTKRYGKRFLKSLPE  922 (944)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCEEEE-EECCCCCCCHHHHHHHHHHHC
T ss_conf             286778853899999988543114641110130799998775100025523554689-971101160478999984000