HHsearch alignment for GI: 254780382 and conserved domain: TIGR01407
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=99.71 E-value=5.5e-16 Score=122.03 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=82.0
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCEEE----
Q ss_conf 65067762134432222222222332--222234542033323444420135523888846646440788765002----
Q gi|254780382|r 245 MKNGIIFCNQKKNVVNLCHSLEKQGF--SVCAIHGNIDQRSRMKILSNFKEGTIQLMVASDLAARGLDIPDVGHVF---- 318 (465)
Q Consensus 245 ~~k~iIF~~t~~~~~~l~~~L~~~g~--~v~~lhg~l~~~~R~~~~~~F~~g~~~vLV~Td~~~~GiDip~v~~VI---- 318 (465)
T Consensus 765 ~~~~LVLFTS~~mL~~V~~~l~~l~~~~~~~~LaQ~~nsGs~~ki~K~F~~ge~~ILLG~~SFWEGvDf~~~~~~~lvi~ 844 (944)
T TIGR01407 765 SPKILVLFTSKEMLKAVYDLLKELSEEEGLEVLAQGINSGSRAKIKKRFEKGEKAILLGASSFWEGVDFPGNELVILVIP 844 (944)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCEECCCCCCCCCCEEEEEE
T ss_conf 89627516489999999998530200258066741267785789999861478756611554002401179971799985
Q ss_pred ----------------------------EECCCCCHHHHHHHHHCCCCCCC-CEEEEEEECHH--HHHHHHHHHHHHCC
Q ss_conf ----------------------------00246778998875210245888-53999977888--99999999999623
Q gi|254780382|r 319 ----------------------------NFDVPNRAENYIHRIGRTGRAGR-HGKAFTLVAKE--DIKHIDAIEKLIEK 366 (465)
Q Consensus 319 ----------------------------~~d~P~~~~~y~hR~GR~gR~g~-~G~~i~~~~~~--d~~~~~~i~~~~~~ 366 (465)
T Consensus 845 RLPF~nP~~pL~kk~~~~~~~EG~npF~~~~lP~A~~RlrQalGRliR~e~drg~~~-~LD~Rl~~~~Ygk~~~~~L~~ 922 (944)
T TIGR01407 845 RLPFANPKEPLTKKKLQKLEEEGKNPFYDYALPMAILRLRQALGRLIRRENDRGSIL-VLDKRLVTKRYGKRFLKSLPE 922 (944)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHCCCCCCCEEEE-EECCCCCCCHHHHHHHHHHHC
T ss_conf 286778853899999988543114641110130799998775100025523554689-971101160478999984000