HHsearch alignment for GI: 254780382 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=97.63 E-value=0.00015 Score=48.30 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=31.9
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9843669888999999978798789899999999976997999827985178999999999986065
Q gi|254780382|r 1 MDFADLGLSPKVVCAVLDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTASFVLPMLTILEKGR 67 (465)
Q Consensus 1 ~~f~~l~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~~~~lp~l~~l~~~~ 67 (465)
T Consensus 107 p~fe~LGLP~~v~~~~a~~~~----------------G-LiLVTGPTGSGKSTTl-AsmIDyIN~~~ 155 (350)
T TIGR01420 107 PTFEELGLPRPVLRELAERPR----------------G-LILVTGPTGSGKSTTL-ASMIDYINKNK 155 (350)
T ss_pred CCHHHCCCCHHHHHHHHHCCC----------------C-CEEEECCCCCCHHHHH-HHHHHHHHCCC
T ss_conf 216663798789999983669----------------9-3898768898678999-99997874038