HHsearch alignment for GI: 254780382 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.02 E-value=0.0001 Score=49.30 Aligned_cols=148 Identities=22% Similarity=0.221 Sum_probs=86.6
Q ss_pred HHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHHHHHCCCCCCCC-CEEEEECCCHHHHHHHHHHHH
Q ss_conf 9787987898999999999769979998279851789--9999999998606521478-279998285899999999987
Q gi|254780382|r 17 LDAGYVKPTPIQIKTIPLVLQRHDVCGIAQTGTGKTA--SFVLPMLTILEKGRARVRM-PRTLILEPTRELAAQVADNFE 93 (465)
Q Consensus 17 ~~~~~~~pt~iQ~~~i~~~l~g~dvi~~apTGsGKT~--~~~lp~l~~l~~~~~~~~~-~~~lil~PtreLa~Qi~~~~~ 93 (465)
T Consensus 221 ~~~~~~~~~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~--~~G~~~~~I~l~APTGKAa~RL~esl~ 298 (753)
T TIGR01447 221 NEQNGRKVTDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSP--KQGKPRLRIALAAPTGKAAARLAESLR 298 (753)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 045443113799999999860876899879889778999999999999898--649974047886684479999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHH--CCCC-----CCCCCEEECCCCCCCCCCCCCHHH
Q ss_conf 410233322100001222222222221011221022102333320--0000-----012100102551000000010035
Q gi|254780382|r 94 KYGKNYNLTVALLIGGIPFEAQNKKLERGADVLICTPGRILDHFN--RGKL-----LMNNIEILVIDEADRMLDMGFIPY 166 (465)
Q Consensus 94 ~~~~~~~l~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rl~~~l~--~~~~-----~l~~~~~lViDEah~l~~~gf~~~ 166 (465)
T Consensus 299 ~~~~~L~~~~~ai----d--~---~~~~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaS-MVdl---~l 365 (753)
T TIGR01447 299 KAVKKLAAENMAI----D--E---DLIAALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEAS-MVDL---PL 365 (753)
T ss_pred HHHHHHHHHCCCC----C--H---HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCH-HCCH---HH
T ss_conf 8863223423665----8--7---9854872045688886166147876776777788985527870600-2267---99
Q ss_pred HHHHHHHHCCCCC
Q ss_conf 7887543102222
Q gi|254780382|r 167 IQNITSLVPFTRQ 179 (465)
Q Consensus 167 i~~i~~~~~~~~q 179 (465)
T Consensus 366 m~kL~~A~~~~~k 378 (753)
T TIGR01447 366 MAKLLKALPPNTK 378 (753)
T ss_pred HHHHHHHCCCCCC
T ss_conf 9999972263001