HHsearch alignment for GI: 254780382 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.94 E-value=4.1e-27 Score=193.80 Aligned_cols=302 Identities=21% Similarity=0.293 Sum_probs=180.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHH---HHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHH----H-CC-C-CCCCCC-----
Q ss_conf 7999827985178999999999---986065214782799982858999999999874----1-02-3-332210-----
Q gi|254780382|r 40 DVCGIAQTGTGKTASFVLPMLT---ILEKGRARVRMPRTLILEPTRELAAQVADNFEK----Y-GK-N-YNLTVA----- 104 (465)
Q Consensus 40 dvi~~apTGsGKT~~~~lp~l~---~l~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~----~-~~-~-~~l~~~----- 104 (465)
T Consensus 1 ~~v~~APTG~GKTe~aL~~A~~sah~~k~~----~~~~~I~alP~r~~~na~~~r~~~sash~Fg~P~~~~~~~ssrfnh 76 (424)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALKSAHLIKKQ----KADKVIFALPTRVTINAMYRRLKESASHLFGSPELVLLLHSSRFNH 76 (424)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHH----HHCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 968861789987899999998636664224----4401012202688899999999986775417854323345522678
Q ss_pred -CCC---CCCCCCCCCCCCCC-------H------HHHHHCCCCHHHHHHHC---CCCC-----CC--CCEEECCCCCCC
Q ss_conf -000---12222222222210-------1------12210221023333200---0000-----12--100102551000
Q gi|254780382|r 105 -LLI---GGIPFEAQNKKLER-------G------ADVLICTPGRILDHFNR---GKLL-----MN--NIEILVIDEADR 157 (465)
Q Consensus 105 -~~~---gg~~~~~~~~~l~~-------~------~~IiV~TP~rl~~~l~~---~~~~-----l~--~~~~lViDEah~ 157 (465)
T Consensus 77 ~~~~ik~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~pi~~~T~d~~~~~~~~~ssGs~~~~~~~~~~~~~S~~i~DE~h~ 156 (424)
T TIGR01587 77 LASSIKLRKIKEKGDSEELEKLVKLYIHSNKKLFLKPITVCTIDQVLKSVFGESSGSFGHYEITLASIANSLIIFDEVHA 156 (424)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHEEECCCCCCCHHHHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987763047827999999852242121013178853412200000055344520568888777767656253677
Q ss_pred CCCCCCHHH-HHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCC----------------CCC
Q ss_conf 000010035-788754310--2222233343211222211112222210013------444----------------321
Q gi|254780382|r 158 MLDMGFIPY-IQNITSLVP--FTRQTLLFSATMTDELQKVSENFLQNPKRIE------VNT----------------PSS 212 (465)
Q Consensus 158 l~~~gf~~~-i~~i~~~~~--~~~q~i~~SAT~~~~v~~l~~~~l~~~~~i~------v~~----------------~~~ 212 (465)
T Consensus 157 y~~-~~~~~~~l~~L~~~~~~~~~~~~lMsATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~GvnGaqrfdllahPe~~ 235 (424)
T TIGR01587 157 YEE-YTLALTILAALEVLKIDNDVKILLMSATLPRELKKFLKEYLEKIEYVEENELLDLKEVEGVNGAQRFDLLAHPEFK 235 (424)
T ss_pred HHH-HHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHH
T ss_conf 764-2555569999999998738988998405675789999987310476333355786643546420233332172021
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC---CCCCCCCCCHHHHHHH-
Q ss_conf 23464211111222211024443210-122345650677621344322222222223322---2223454203332344-
Q gi|254780382|r 213 TAETIEHCFVATYAQYSKKCALLQQL-LQSQDTMKNGIIFCNQKKNVVNLCHSLEKQGFS---VCAIHGNIDQRSRMKI- 287 (465)
Q Consensus 213 ~~~~i~~~~~~~~~~~~~k~~~l~~l-~~~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~---v~~lhg~l~~~~R~~~- 287 (465)
T Consensus 236 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KE 315 (424)
T TIGR01587 236 EKRFENHRISLIEKDKVGEISSLERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKE 315 (424)
T ss_pred HHHHHCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
T ss_conf 00221576421343203313466667787415778669998543899999999851265200212440447700366776
Q ss_pred -----HHHHCC-----CCCEEEEEHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC-E-----EEEEEE
Q ss_conf -----442013-----5523888846646440788765002002467789988752102458885-3-----999977
Q gi|254780382|r 288 -----LSNFKE-----GTIQLMVASDLAARGLDIPDVGHVFNFDVPNRAENYIHRIGRTGRAGRH-G-----KAFTLV 349 (465)
Q Consensus 288 -----~~~F~~-----g~~~vLV~Td~~~~GiDip~v~~VI~~d~P~~~~~y~hR~GR~gR~g~~-G-----~~i~~~ 349 (465)
T Consensus 316 de~~~l~e~~~S~~~~~~~~v~V~TQv~E~SlD~s-~D~~iTe~a--P~d~LiQR~GR~~R~~~~~~d~~~~~~y~~~ 390 (424)
T TIGR01587 316 DEAELLKELKKSAWKDNEKFVIVATQVIEVSLDIS-VDVMITELA--PIDSLIQRLGRLNRYGRKIGDIENREVYILT 390 (424)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECC-CCHHHHHCC--CHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
T ss_conf 79999998510135445770699878788864204-441343115--0123355421110113565788987203785